PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009771455.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | E2F/DP | ||||||||
Protein Properties | Length: 373aa MW: 41733.1 Da PI: 9.4161 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 76.2 | 3.1e-24 | 20 | 85 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rkeksL+ll+ +flkl+ ++ + + l+++a++L v +rRRiYDi+N+Le+++++++k+kn+++w+g XP_009771455.1 20 RKEKSLGLLCANFLKLCDREGVDSIGLDNAADQL---GV--ERRRIYDIVNILESVGVLSRKAKNQYKWNG 85 79*****************999************...**..****************************98 PP | |||||||
2 | E2F_TDP | 72.5 | 4.8e-23 | 142 | 221 | 1 | 70 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwk 70 rkeksL +l+q+f+kl+++s+ + ++l+++a++L+ + +k+k RR+YDi+NV+ ++nliek + k++++w+ XP_009771455.1 142 RKEKSLMILAQNFVKLFHCSDVDLISLDKAASALLGDmhdpmAMKTKTRRLYDIANVFVSMNLIEKirspdNGKPAFKWI 221 79*******************************************************************9999******7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.7E-25 | 18 | 86 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 7.18E-16 | 19 | 83 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 3.8E-27 | 20 | 85 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.7E-20 | 21 | 85 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.1E-19 | 139 | 221 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 2.8E-24 | 142 | 222 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 7.5E-18 | 143 | 221 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 4.03E-11 | 144 | 221 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MSSSVNPEEA QWKNPNIYSR KEKSLGLLCA NFLKLCDREG VDSIGLDNAA DQLGVERRRI 60 YDIVNILESV GVLSRKAKNQ YKWNGFSAIP KAVDLLKKEG LKDQSVVSST SHNVANVIAC 120 NHSDLKEKGQ DKTSGSHKID NRKEKSLMIL AQNFVKLFHC SDVDLISLDK AASALLGDMH 180 DPMAMKTKTR RLYDIANVFV SMNLIEKIRS PDNGKPAFKW IAWRENPRTG SPAASKSDDS 240 KRRTFGAEIT NTISKRCRAD SSSDLVSNGQ VKRLKVAKDD ELKDKNQEMS TERLNGHGTM 300 DFVFGPFGPA SLSKAGVSGK ENLKQTQNWE DLASTYRPQY QNKAASELFA HYVEAWESWQ 360 VEAANELHKQ HLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 6e-33 | 19 | 208 | 3 | 222 | Transcription factor E2F8 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215413 | 1e-123 | AC215413.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0189G15, complete sequence. | |||
GenBank | HG975441 | 1e-123 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. | |||
GenBank | HG975514 | 1e-123 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009771455.1 | 0.0 | PREDICTED: E2F transcription factor-like E2FF isoform X1 | ||||
TrEMBL | A0A1U7WB53 | 0.0 | A0A1U7WB53_NICSY; E2F transcription factor-like E2FF isoform X1 | ||||
STRING | XP_009771455.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2522 | 24 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.2 | 1e-100 | DP-E2F-like 1 |