PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009771454.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 406aa    MW: 44492.2 Da    PI: 8.9489
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009771454.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.44e-16196242455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L ++++Y+k+Lq
  XP_009771454.1 196 VHNQSERRRRDRINQKMKALQRLVPNA-----SKTDKASMLDEVINYLKQLQ 242
                     6*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.752192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-19195265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13196242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.33E-16197246No hitNo description
Gene3DG3DSA:4.10.280.103.8E-18197255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-17198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MRDTLYTGSK CEKVAELTWE NRHGVGGILS MSQTKPTLGR AGDTLESIVH QATYHGQINQ  60
TSIQNYDQNQ NLKIGMCVGK WGESSQHQMA APPGGATVLA KKRMRSESDP KYGGKLVGED  120
EYAELSACAS ASATFCREND TTMVTWPSFD ESSRSIKSKT SCDEDSACHD GGSENKEEEH  180
ETKRSNSSRR SRAAVVHNQS ERRRRDRINQ KMKALQRLVP NASKTDKASM LDEVINYLKQ  240
LQAQVQLMNS VRNMAPQMMM PLGMHQHIQM SLLARMGMGV GLGMGMGMFD MTALARAAAA  300
AAHQSLTTHP LIHTNPIANP TNPFIPPAFA MPAAPAIPSA AQANTVGRAT TAVTPPPYSA  360
FPTQPMDMEY FNNMAALYRQ QANNHSTQTT GYKLNQGNLN IQGQRE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200205ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754422e-81HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771454.10.0PREDICTED: transcription factor UNE10-like isoform X2
TrEMBLA0A1U7W9W80.0A0A1U7W9W8_NICSY; transcription factor UNE10-like isoform X2
STRINGXP_009771453.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.18e-36bHLH family protein