PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009771449.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 304aa    MW: 34682.2 Da    PI: 9.2509
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009771449.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.35.7e-3460195189
             TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............................. 65 
                     a+g+kdrhsk++T+ g+RdRRvRls ++a++f+d+qd+LG+d++sk+i+WL+++ak+ai++l ++                              
  XP_009771449.1  60 ATGRKDRHSKVSTASGPRDRRVRLSPNTAIQFYDVQDRLGYDRPSKAIDWLIKEAKAAIDALENNpfqvlsrkvdstnkalnwrtinveneegqf 154
                     589**************************************************************999999877766665555544442222222 PP

             TCP  66 ssssaseceaesssssasnsssg........................k 89 
                              ++ss++s++ s ++                        k
  XP_009771449.1 155 V-------LEQSSKVSQEYSDIPkyecgvqnespngnlslfssvndaK 195
                     0.......3333333333222223333333322233333332222220 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.0E-3061213IPR005333Transcription factor, TCP
PROSITE profilePS5136930.36963121IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
SHYAKWANFT SPSATLVPKH QNNAQCPSFK QEIKNVSPKK KPKRTNTDVI EVHRSRIVRA  60
TGRKDRHSKV STASGPRDRR VRLSPNTAIQ FYDVQDRLGY DRPSKAIDWL IKEAKAAIDA  120
LENNPFQVLS RKVDSTNKAL NWRTINVENE EGQFVLEQSS KVSQEYSDIP KYECGVQNES  180
PNGNLSLFSS VNDAKIQSVS DFQRYQQGHF HSETKNQAQC NFYNFQSSQD QSVIFSTNSN  240
LELREDSTFS FLSHNFPSIL GQNQFFNQRE YLQSSFLAQT SVPLNTQFQT SSYANNEFSS  300
DGLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1968121154Putative transcription factor PCF6
5zkt_B4e-1968121154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771449.10.0PREDICTED: transcription factor TCP3-like, partial
TrEMBLA0A1U7W9V90.0A0A1U7W9V9_NICSY; transcription factor TCP3-like
STRINGXP_009771449.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41122145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.15e-37TCP domain protein 10