PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009771344.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WOX | ||||||||
Protein Properties | Length: 178aa MW: 20929.1 Da PI: 10.6294 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.8 | 1.6e-17 | 3 | 62 | 2 | 56 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 r+R+++t++ql +L++l++k +p+ +e + ++++l +++ ++V++WFqN++a+++ XP_009771344.1 3 RTRWKPTPQQLMILQDLYRKgLTNPNSSEVQMITSHLsmygKIQWKNVFYWFQNHKARDR 62 89*****************99*************************************99 PP | |||||||
2 | Wus_type_Homeobox | 103.6 | 1.3e-33 | 2 | 64 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +rtRW Ptp+Q++iL++ly++Gl +Pn++e+q it++L+ yGki+ kNVfyWFQN+kaR+r+k XP_009771344.1 2 PRTRWKPTPQQLMILQDLYRKGLTNPNSSEVQMITSHLSMYGKIQWKNVFYWFQNHKARDRHK 64 589**********************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 1.1E-5 | 1 | 68 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 10.09 | 1 | 64 | IPR001356 | Homeobox domain |
CDD | cd00086 | 0.00188 | 2 | 65 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.4E-7 | 2 | 68 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.55E-11 | 3 | 64 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.7E-15 | 3 | 63 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MPRTRWKPTP QQLMILQDLY RKGLTNPNSS EVQMITSHLS MYGKIQWKNV FYWFQNHKAR 60 DRHKMRKQLL QKYPKDDHRQ LIINNKNPPS PSPSPSSSTT VSQVYSHSPP IFLHQVEATT 120 EVSPQMMNYL WGNRMMRMNG RDWILMTDKG SSNIVHCSNK VPLRTLELFP VETTGFKD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009771344.1 | 1e-131 | PREDICTED: WUSCHEL-related homeobox 3-like | ||||
TrEMBL | A0A1U7W9L6 | 1e-130 | A0A1U7W9L6_NICSY; WUSCHEL-related homeobox 3-like | ||||
STRING | XP_009771344.1 | 1e-131 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2959 | 19 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 6e-34 | WOX family protein |