PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009771344.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WOX
Protein Properties Length: 178aa    MW: 20929.1 Da    PI: 10.6294
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009771344.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.81.6e-17362256
                    T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
        Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56
                    r+R+++t++ql +L++l++k   +p+ +e + ++++l    +++ ++V++WFqN++a+++
  XP_009771344.1  3 RTRWKPTPQQLMILQDLYRKgLTNPNSSEVQMITSHLsmygKIQWKNVFYWFQNHKARDR 62
                    89*****************99*************************************99 PP

2Wus_type_Homeobox103.61.3e-33264264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       +rtRW Ptp+Q++iL++ly++Gl +Pn++e+q it++L+ yGki+ kNVfyWFQN+kaR+r+k
     XP_009771344.1  2 PRTRWKPTPQQLMILQDLYRKGLTNPNSSEVQMITSHLSMYGKIQWKNVFYWFQNHKARDRHK 64
                       589**********************************************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.1E-5168IPR001356Homeobox domain
PROSITE profilePS5007110.09164IPR001356Homeobox domain
CDDcd000860.00188265No hitNo description
Gene3DG3DSA:1.10.10.608.4E-7268IPR009057Homeodomain-like
SuperFamilySSF466898.55E-11364IPR009057Homeodomain-like
PfamPF000463.7E-15363IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MPRTRWKPTP QQLMILQDLY RKGLTNPNSS EVQMITSHLS MYGKIQWKNV FYWFQNHKAR  60
DRHKMRKQLL QKYPKDDHRQ LIINNKNPPS PSPSPSSSTT VSQVYSHSPP IFLHQVEATT  120
EVSPQMMNYL WGNRMMRMNG RDWILMTDKG SSNIVHCSNK VPLRTLELFP VETTGFKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771344.11e-131PREDICTED: WUSCHEL-related homeobox 3-like
TrEMBLA0A1U7W9L61e-130A0A1U7W9L6_NICSY; WUSCHEL-related homeobox 3-like
STRINGXP_009771344.11e-131(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29591951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.16e-34WOX family protein