PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009771204.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 446aa MW: 49142.8 Da PI: 6.9107 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 3e-17 | 39 | 86 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd l d+++++G g+W+++ ++ g+ R++k+c++rw ++l XP_009771204.1 39 KGPWTKEEDAVLMDYIRKHGEGNWSAVQKHSGLARCGKSCRLRWANHL 86 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 43.3 | 8.6e-14 | 92 | 135 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+ T+eE ++ ++++++G++ W+ Ia++++ gRt++++k++w++ XP_009771204.1 92 KGALTPEEVRRINELHAKMGNK-WAQIAAKLP-GRTDNEIKNYWNT 135 6788******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.566 | 34 | 90 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.05E-29 | 36 | 133 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.3E-24 | 37 | 89 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.9E-14 | 38 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-15 | 39 | 86 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.33E-12 | 41 | 86 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-23 | 90 | 140 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.822 | 91 | 141 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-13 | 91 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-12 | 92 | 135 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.82E-10 | 96 | 135 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MCMTSECVDR MTSKVGVGSP SVEEASGGGN TRGGVPLKKG PWTKEEDAVL MDYIRKHGEG 60 NWSAVQKHSG LARCGKSCRL RWANHLRPDL KKGALTPEEV RRINELHAKM GNKWAQIAAK 120 LPGRTDNEIK NYWNTRIKKR RRVGLQIYPP DICFQAFSEN KQNNELGIFS SANSHPDFLP 180 INDFEIPTVE FKKLEPSQQL YPWALVNIAA SSFFDIPATS LLAQALSSSN TCSGLSTMHP 240 SKRIRGSESW FFGMTDNLFQ ACHQYQNNGS LFAQSLGFSS SYTHNLTSDN HPSFSGEIPG 300 SHAPLNGNSS SSEPKWAKKL ELPSLQIQMA NWGSPSPLPS LESFDTLIQY PPNEHADSGS 360 LSPRNSGLLD AVLYESQTSK ASKHNSHQET SCDVVDDSCP DLQETQWGTY SNPISPLGHS 420 AASVLSEYTP TEVHWMSPPV NSDGGW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-31 | 34 | 140 | 1 | 107 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 142 | KRRRV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009771204.1 | 0.0 | PREDICTED: transcription factor GAMYB-like isoform X1 | ||||
TrEMBL | A0A1U7W971 | 0.0 | A0A1U7W971_NICSY; transcription factor GAMYB-like isoform X1 | ||||
STRING | XP_009771204.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2021 | 23 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11440.1 | 3e-78 | myb domain protein 65 |