PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009771078.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 278aa    MW: 30980 Da    PI: 7.3878
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009771078.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.22.2e-29111441128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLp.k...kvkaeek..ewyfFskrdkkyatgkrknratksgyWkat 86 
                     lppG rF P+de+l+++yL  k ++++   +++ + i+e+d+y+++P +Lp +   k+  + +  +w+ F+ r  k       +r +  gyWk+ 
  XP_009771078.1  11 LPPGTRFYPSDEQLICYYLSLKNSADHrndFQF-NLIREIDLYNFDPFNLPdSacfKYGRGGRkrHWFCFVARVLKG-----GRRRAGGGYWKKR 99 
                     79*****************99987777433333.56**************953666444444412666666655543.....2445689****** PP

             NAM  87 gkdkevlsk..kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                     g+ ++v+ +  ++ + g++k++vfy g  +++++ktdW+m ey+l
  XP_009771078.1 100 GRVRDVMGEgaGTVVAGTRKSFVFYLGdCTKTAVKTDWLMYEYAL 144
                     ********97667779*********884567789*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-367160IPR003441NAC domain
PROSITE profilePS5100538.64511160IPR003441NAC domain
PfamPF023651.1E-1812144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGDPNPTSFS LPPGTRFYPS DEQLICYYLS LKNSADHRND FQFNLIREID LYNFDPFNLP  60
DSACFKYGRG GRKRHWFCFV ARVLKGGRRR AGGGYWKKRG RVRDVMGEGA GTVVAGTRKS  120
FVFYLGDCTK TAVKTDWLMY EYALIGNPMA SFVLCRVFIK SRYRNNLSEH VFSSYGEETV  180
AAVRHVGIQC DGTAASVTES KMHDGNTVDQ ENDVSKLQNG IVTNLNGQAL TESVVKQIGL  240
ESDRPPGLNG FSAQELTAIL EGDFIELDDL LCPLPGIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-28716113166NO APICAL MERISTEM PROTEIN
1ut4_B1e-28716113166NO APICAL MERISTEM PROTEIN
1ut7_A1e-28716113166NO APICAL MERISTEM PROTEIN
1ut7_B1e-28716113166NO APICAL MERISTEM PROTEIN
3swm_A2e-28716116169NAC domain-containing protein 19
3swm_B2e-28716116169NAC domain-containing protein 19
3swm_C2e-28716116169NAC domain-containing protein 19
3swm_D2e-28716116169NAC domain-containing protein 19
3swp_A2e-28716116169NAC domain-containing protein 19
3swp_B2e-28716116169NAC domain-containing protein 19
3swp_C2e-28716116169NAC domain-containing protein 19
3swp_D2e-28716116169NAC domain-containing protein 19
4dul_A1e-28716113166NAC domain-containing protein 19
4dul_B1e-28716113166NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18593GGRRRAGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771078.10.0PREDICTED: NAC domain-containing protein 19-like isoform X2
RefseqXP_016443541.10.0PREDICTED: NAC domain-containing protein 19-like isoform X2
TrEMBLA0A1S3XUC10.0A0A1S3XUC1_TOBAC; NAC domain-containing protein 19-like isoform X2
TrEMBLA0A1U7VXG60.0A0A1U7VXG6_NICSY; NAC domain-containing protein 19-like isoform X2
STRINGXP_009771077.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52890.11e-29NAC domain containing protein 19