PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009770980.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 278aa    MW: 31750.5 Da    PI: 6.7894
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009770980.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.4e-141663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+++Ed++l+d++ ++G  +W++++   g++R +k+c++rw +yl
   XP_009770980.1 16 KGLWSPDEDQKLKDYIIKYGHVCWSSVPINAGLKRNGKSCRLRWINYL 63
                     678*****************99**********9*************97 PP
2Myb_DNA-binding55.21.6e-1769114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++teE+e ++ ++ + G++ W++Ia++++ gRt++++k++w++yl
   XP_009770980.1  69 RGAFSTEEEETILTLHGMIGNK-WSRIAQHLP-GRTDNEIKNHWHSYL 114
                      89********************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.51163IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-201166IPR009057Homeodomain-like
SuperFamilySSF466891.39E-2714110IPR009057Homeodomain-like
SMARTSM007171.6E-121565IPR001005SANT/Myb domain
PfamPF002491.4E-121663IPR001005SANT/Myb domain
CDDcd001677.67E-101963No hitNo description
PROSITE profilePS5129426.33564118IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-2567118IPR009057Homeodomain-like
SMARTSM007175.4E-1568116IPR001005SANT/Myb domain
PfamPF002497.1E-1669114IPR001005SANT/Myb domain
CDDcd001675.32E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MRCKPAVDKP KQKHKKGLWS PDEDQKLKDY IIKYGHVCWS SVPINAGLKR NGKSCRLRWI  60
NYLRPGLKRG AFSTEEEETI LTLHGMIGNK WSRIAQHLPG RTDNEIKNHW HSYLKKRVDK  120
IAESEGQSQN IDGVSSSSLK LASRNSSLDS FAQTVGSLAD TDQDVSPVDF LNEPRKSKFR  180
KVLFAEWFSL DQFNGQDFQN SDLSKNNFCY NSSEFQDAFV MSKGAYENDI NIQGINNETV  240
DNDMFQAQLK FEDQLSTNGF EELLSGDFNI NGDVMYIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25161197109B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770980.10.0PREDICTED: transcription factor MYB46-like
RefseqXP_016471228.10.0PREDICTED: transcription repressor MYB6-like
TrEMBLA0A1S4A3L10.0A0A1S4A3L1_TOBAC; transcription repressor MYB6-like
TrEMBLA0A1U7W9R40.0A0A1U7W9R4_NICSY; transcription factor MYB46-like
STRINGXP_009770980.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.12e-61myb domain protein 19