PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009770805.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 202aa    MW: 23314.7 Da    PI: 9.8243
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009770805.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM72.88.3e-23131423128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLp.kkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     +G+rFhPt+ el+ ++Lk+ ++g+ l+ e   ++ +diy    Pw++  ++ ++ +ek  y F++ +k++++ +r +r+ ++g+Wk +    +++
  XP_009770805.1  13 MGVRFHPTEAELI-NFLKRFLKGELLPSECPnFQLADIYGDqPPWEIFgANSDHpKEKVRYIFTRLKKQKSEHTRVRRTCANGTWKGQTGIDPIK 106
                     7************.9*********977755459999***87368***7333333255566**************************8888899** PP

             NAM  94 skkgelvglkktLvfykgrapkge.ktdWvmheyrl 128
                     ++kg++ g ++ + f + r+++ge + +W+m+ey++
  XP_009770805.1 107 NAKGTVAGFRRCFKFQTSRSKEGEhNKNWLMKEYSV 142
                     *9**************999999874789******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-273164IPR003441NAC domain
PROSITE profilePS5100526.61811165IPR003441NAC domain
PfamPF023652.3E-1513142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MSMVPAARRG CIMGVRFHPT EAELINFLKR FLKGELLPSE CPNFQLADIY GDQPPWEIFG  60
ANSDHPKEKV RYIFTRLKKQ KSEHTRVRRT CANGTWKGQT GIDPIKNAKG TVAGFRRCFK  120
FQTSRSKEGE HNKNWLMKEY SVGNDFFREN NIPKEDIVVC RIKKNIRSKK NHGVNMEEQD  180
VPKAIEAMLH GPDEDYCTTV QP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU7532600.0EU753260.1 Nicotiana tabacum NAC transcription factor (NAC3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770805.11e-152PREDICTED: protein SOMBRERO-like, partial
TrEMBLA0A1U7W9791e-151A0A1U7W979_NICSY; protein SOMBRERO-like
TrEMBLB3VK721e-150B3VK72_TOBAC; NAC transcription factor
STRINGXP_009770805.11e-152(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.18e-16NAC domain containing protein 2