PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009770802.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 508aa MW: 57594.5 Da PI: 7.5858

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009770802.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.5	4.6e-18	20	75	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ q+e+Le+l+e+++yp+ e++++LA++ gLte+q++ WF+ rR k+k+ XP_009770802.1 20 KKRIIKTRAQVEALEKLYEEHKYPTDEMKADLAESSGLTEKQISGWFCHRRLKDKR 75 89****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-20	6	75	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.28E-16	12	76	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.536	16	76	IPR001356	Homeobox domain
SMART	SM00389	1.5E-18	18	80	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-15	20	75	IPR001356	Homeobox domain
CDD	cd00086	7.56E-16	20	75	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MEDLCEVHSE DDKGHPEKNK KRIIKTRAQV EALEKLYEEH KYPTDEMKAD LAESSGLTEK 60 QISGWFCHRR LKDKRLSNGE RYANGRQDRS SGVIQDHGSG FRQDSCGSTK QADDKRFDHR 120 EVESRRLTGP EFSTADVTYE VGTHFRGKSN PMDDASSRSS SSLRNECFSH NAESYDIATS 180 RYISQNLPAD FKGVKPKNGP SGYLKVKGQV ENAAITAVKR QLGRHYRLDG PALGVEFDPL 240 PPGAFESSVP NPVNEPVPDC SPDMSNVCRR SNGHRSNSKS NSHDSDLDGL SFKRKTNSAH 300 PEYHFNLKPK PNFSEHNEYP KWNSSLDTYE GSARKIAVDS RDSCKFMPKH GRAEIRAITG 360 SSNGLRNPYV GKVNGEQLKP RFSSHSEVSL KAVEKEHSDH KPSDYKGINY HNFEGRELPK 420 IVEKDHISGK RTAVDENHDL VRVKVPRHNE TRVVHRPMDE VPDHQEYLRR APALEIPLQT 480 NHRIRTAAEM RRSFSEDEET EESSSFDD

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MEDLCEVHSE DDKGHPEKNK KRIIKTRAQV EALEKLYEEH KYPTDEMKAD LAESSGLTEK  60
QISGWFCHRR LKDKRLSNGE RYANGRQDRS SGVIQDHGSG FRQDSCGSTK QADDKRFDHR  120
EVESRRLTGP EFSTADVTYE VGTHFRGKSN PMDDASSRSS SSLRNECFSH NAESYDIATS  180
RYISQNLPAD FKGVKPKNGP SGYLKVKGQV ENAAITAVKR QLGRHYRLDG PALGVEFDPL  240
PPGAFESSVP NPVNEPVPDC SPDMSNVCRR SNGHRSNSKS NSHDSDLDGL SFKRKTNSAH  300
PEYHFNLKPK PNFSEHNEYP KWNSSLDTYE GSARKIAVDS RDSCKFMPKH GRAEIRAITG  360
SSNGLRNPYV GKVNGEQLKP RFSSHSEVSL KAVEKEHSDH KPSDYKGINY HNFEGRELPK  420
IVEKDHISGK RTAVDENHDL VRVKVPRHNE TRVVHRPMDE VPDHQEYLRR APALEIPLQT  480
NHRIRTAAEM RRSFSEDEET EESSSFDD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009770802.1	0.0	PREDICTED: uncharacterized protein LOC104221429 isoform X2
TrEMBL	A0A1U7VSD2	0.0	A0A1U7VSD2_NICSY; uncharacterized protein LOC104221429 isoform X2
STRING	XP_009770801.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	5e-67	HB-other family protein