PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009770705.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 413aa MW: 46530.2 Da PI: 6.7946 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.9 | 4.8e-33 | 44 | 98 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt +LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl XP_009770705.1 44 KPRLKWTADLHERFIEAVNQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 98 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.925 | 41 | 101 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-31 | 42 | 99 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.68E-16 | 43 | 99 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-23 | 44 | 99 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.1E-10 | 46 | 97 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.5E-25 | 142 | 188 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MYHQHHQTAN MHPSTRMSFP ERHLFLQGGN VNGDSGLVLS TDAKPRLKWT ADLHERFIEA 60 VNQLGGADKA TPKSVLKLMG IQGLTLYHLK SHLQKYRLSK NLHGQANISG VNKAAGIEKI 120 CESTGTPMSH PSIGPQPNNN IPINEAIQMQ IEVQRRLHEQ LEVQRHLQLR IEAQGKYLQA 180 VLEKAQETLG TQNLGTIGLE AAKDQLSDLV SKVSNQCLNS AFSEIKELSG FHNPQTQAIP 240 PADCSMDSCL TSSERPLRDL REMHNNQIGL RPLNFGPCTK DIENETRLQQ TELRWRDDLK 300 ENRKLFPKMD GDSEKEFTKE TNWSNLSMDI GLQGERRNVS SSYFDGRLNG IDADIKRFHQ 360 DADRSDSMKP EKQMSSQGYE LPYFAPKLDL NTDDQTDAAS SCKQLDLNGF SWS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-21 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-21 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-21 | 44 | 100 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-21 | 44 | 100 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-21 | 44 | 100 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-21 | 44 | 100 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-21 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-21 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-21 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-21 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-21 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-21 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 0.0 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009770705.1 | 0.0 | PREDICTED: uncharacterized protein LOC104221350 isoform X2 | ||||
Refseq | XP_016516112.1 | 0.0 | PREDICTED: uncharacterized protein LOC107832752 isoform X2 | ||||
Swissprot | Q9SQQ9 | 1e-124 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | A0A1S4DRS2 | 0.0 | A0A1S4DRS2_TOBAC; uncharacterized protein LOC107832752 isoform X2 | ||||
TrEMBL | A0A1U7W8X8 | 0.0 | A0A1U7W8X8_NICSY; uncharacterized protein LOC104221350 isoform X2 | ||||
STRING | XP_009770704.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 1e-115 | G2-like family protein |
Publications ? help Back to Top | |||
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