PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009770697.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 342aa MW: 38216.5 Da PI: 7.466

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009770697.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.8	1.9e-32	168	226	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK vk+s+fprsYYrCt+ +C vkk+vers +d+++v++tYeg+H+h+ XP_009770697.1 168 LDDGFRWRKYGQKAVKSSPFPRSYYRCTTISCGVKKRVERSIKDTSIVVTTYEGTHTHP 226 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-31	153	226	IPR003657	WRKY domain
SuperFamily	SSF118290	6.8E-28	160	226	IPR003657	WRKY domain
PROSITE profile	PS50811	29	163	228	IPR003657	WRKY domain
SMART	SM00774	1.4E-36	168	227	IPR003657	WRKY domain
Pfam	PF03106	1.7E-25	169	226	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MEKENKLKAE TSLENPMFSQ QIQTSFSLPN IFDMLCETEK DSLGLLDTTM FGAHLLDFNT 60 TIPSIFDLLQ TSPPQSLTNI PSPTSTFQES CEVEVVNNNP TTPNSLSISS SSTEAADGDQ 120 QRKRVDQQND EQDQDKYKKQ LKPKKKNVQK RQREPSFAFM TKSEIDHLDD GFRWRKYGQK 180 AVKSSPFPRS YYRCTTISCG VKKRVERSIK DTSIVVTTYE GTHTHPCRIT PPRGSIGGVL 240 PRTTAYYGGA NGGGNGGGGI CSNSSLSIPQ LHYQEQQQQT LHFPTTTSPL NNFSVGYTSL 300 FSTNSLQERR YSPSPYCSSL TGDDGLLHDM VSSQMRRDTK ED

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MEKENKLKAE TSLENPMFSQ QIQTSFSLPN IFDMLCETEK DSLGLLDTTM FGAHLLDFNT  60
TIPSIFDLLQ TSPPQSLTNI PSPTSTFQES CEVEVVNNNP TTPNSLSISS SSTEAADGDQ  120
QRKRVDQQND EQDQDKYKKQ LKPKKKNVQK RQREPSFAFM TKSEIDHLDD GFRWRKYGQK  180
AVKSSPFPRS YYRCTTISCG VKKRVERSIK DTSIVVTTYE GTHTHPCRIT PPRGSIGGVL  240
PRTTAYYGGA NGGGNGGGGI CSNSSLSIPQ LHYQEQQQQT LHFPTTTSPL NNFSVGYTSL  300
FSTNSLQERR YSPSPYCSSL TGDDGLLHDM VSSQMRRDTK ED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-24	156	225	5	74	Probable WRKY transcription factor 4
2lex_A	1e-24	156	225	5	74	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009770697.1	0.0	PREDICTED: probable WRKY transcription factor 23
Refseq	XP_016465324.1	0.0	PREDICTED: probable WRKY transcription factor 23
TrEMBL	A0A1S3ZLZ8	0.0	A0A1S3ZLZ8_TOBAC; probable WRKY transcription factor 23
TrEMBL	A0A1U7VS39	0.0	A0A1U7VS39_NICSY; probable WRKY transcription factor 23
STRING	XP_009770697.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1309	24	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	3e-41	WRKY DNA-binding protein 48