PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009770621.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 252aa    MW: 29577.3 Da    PI: 8.2953
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009770621.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.6e-14855148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed++l+ +v+++G ++W+  a+  g++Rt+k+c++rw +yl
   XP_009770621.1  8 KGPWSEQEDLQLAFYVNLFGDRRWDFLAKVSGLKRTGKSCRLRWVNYL 55
                     79********************************************97 PP
2Myb_DNA-binding56.18.4e-1861106148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+ l+++++ ++G++ W++Iar+++ gRt++++k++w++++
   XP_009770621.1  61 RGKMTPQEERLILELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 106
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.869355IPR017930Myb domain
SMARTSM007176.8E-12757IPR001005SANT/Myb domain
SuperFamilySSF466892.58E-287102IPR009057Homeodomain-like
PfamPF002491.3E-13855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-20962IPR009057Homeodomain-like
CDDcd001679.43E-81055No hitNo description
PROSITE profilePS5129427.59556110IPR017930Myb domain
SMARTSM007173.2E-1760108IPR001005SANT/Myb domain
PfamPF002493.4E-1661105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2463109IPR009057Homeodomain-like
CDDcd001672.32E-1163106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAQEEARKGP WSEQEDLQLA FYVNLFGDRR WDFLAKVSGL KRTGKSCRLR WVNYLHPGLK  60
RGKMTPQEER LILELHSKWG NRWSRIARKL PGRTDNEIKN YWRTHMRKKA QDDRKNKASI  120
SPSSSFSNCS SYFSSNSPDV EFMPITENNE RNFYDTGGLL GVHEQISLQN AGKKKVGDQE  180
KGKSMKVYSM DEIWKDIELL SEENDTKNKP ILPSTMWEYC PDSTLWMTDE EETKMFPQFY  240
CLDNQDNTFF IG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-2781104105MYB PROTO-ONCOGENE PROTEIN
1h8a_C8e-27511024128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770621.10.0PREDICTED: transcription factor MYB48-like
RefseqXP_016514046.10.0PREDICTED: transcription factor MYB48-like
SwissprotQ4JL766e-74MYBA2_ORYSJ; Myb-related protein MYBAS2
SwissprotQ9LX826e-74MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A1S4DKY00.0A0A1S4DKY0_TOBAC; transcription factor MYB48-like
TrEMBLA0A1U7W0920.0A0A1U7W092_NICSY; transcription factor MYB48-like
STRINGXP_009770621.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.15e-75myb domain protein 48
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  5. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]