PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009770485.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 274aa MW: 31241.4 Da PI: 4.5777 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58 | 2.1e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd+ll+++++++G ++W++ ++ g+ R++k+c++rw +yl XP_009770485.1 14 RGPWSKEEDDLLINYINKHGHPNWRALPKLAGLLRCGKSCRLRWTNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 47.3 | 4.8e-15 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eE+ ++++++ lG++ W+ Ia++++ gRt++++k+ w++ XP_009770485.1 67 RGNFTPEEENTIIKLHQVLGNR-WSGIAARLP-GRTDNEIKNIWHT 110 89********************.*********.*********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.898 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.31E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.58E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.74 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 65 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.1E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.90E-9 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MGRAPCCEKL GLKRGPWSKE EDDLLINYIN KHGHPNWRAL PKLAGLLRCG KSCRLRWTNY 60 LRPDIKRGNF TPEEENTIIK LHQVLGNRWS GIAARLPGRT DNEIKNIWHT RLKKRVDDKS 120 QPQETQDIKD QQTMETSKSE ENFETRSSEP ENSKDNSEEI SSPKTNSQIQ EHPNTPSSTL 180 SSGDSCSNTT ATSASSLADE SRDQILLDNL LEVDDNFWSE VLWAPAETND YNVSDLSLSS 240 LEENYELNSS LNDNWFWDDL FSTANELMLE LPAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-29 | 12 | 117 | 5 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB236951 | 0.0 | AB236951.1 Nicotiana tabacum NtMYBJS1 mRNA for methyl jasmonate induced MYB-related transcription factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009770485.1 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
Swissprot | Q9LTC4 | 2e-74 | MYB15_ARATH; Transcription factor MYB15 | ||||
TrEMBL | A0A1U7W8B2 | 0.0 | A0A1U7W8B2_NICSY; myb-related protein Myb4-like | ||||
STRING | XP_009770485.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06180.1 | 5e-74 | myb domain protein 13 |