PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009770476.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 303aa    MW: 34520.7 Da    PI: 9.5742
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009770476.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.68e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+t Ed+ll +++k+ G g+W+  +++ g+ R++k+c++rw +yl
   XP_009770476.1 14 KGPWSTKEDLLLSNYIKENGEGQWRNLPKKAGLLRCGKSCRLRWMNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding53.74.7e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++++E++l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
   XP_009770476.1  67 RGNFSQDEEDLILRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-21564IPR009057Homeodomain-like
PROSITE profilePS5129415.638961IPR017930Myb domain
SuperFamilySSF466897.81E-2811108IPR009057Homeodomain-like
SMARTSM007175.4E-111363IPR001005SANT/Myb domain
PfamPF002493.8E-131461IPR001005SANT/Myb domain
CDDcd001673.22E-81661No hitNo description
PROSITE profilePS5129425.87962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2565117IPR009057Homeodomain-like
SMARTSM007174.0E-1666114IPR001005SANT/Myb domain
PfamPF002491.1E-1567112IPR001005SANT/Myb domain
CDDcd001671.35E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGRAPCCAKE GLRKGPWSTK EDLLLSNYIK ENGEGQWRNL PKKAGLLRCG KSCRLRWMNY  60
LRPGIKRGNF SQDEEDLILR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLIKKLKSAG  120
IEPKVNTIFS KYCPKKEPKK HPKIEKPRKK QDKKKNKKKK DQSLVQNISD SPLFIPKPIR  180
ISSCRNHSVK DVALLSTSSS NSSEEADKRA DRCTKLPLCA GSSDESNHIG SYVRGLTDEG  240
KIAEVSFIPC ASNLFDEVPL DENMLEKVYE EYLQLLSEKC YLQDNQLDDD LLAGNVFDHS  300
MLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24121185110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754473e-46HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9755203e-46HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770476.10.0PREDICTED: myb-related protein 308-like
RefseqXP_016478544.10.0PREDICTED: myb-related protein 308-like
TrEMBLA0A1S4APF80.0A0A1S4APF8_TOBAC; myb-related protein 308-like
TrEMBLA0A1U7VZT40.0A0A1U7VZT4_NICSY; myb-related protein 308-like
STRINGXP_009770476.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-64myb domain protein 5