PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009770426.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TALE
Protein Properties Length: 391aa    MW: 43624.1 Da    PI: 6.019
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009770426.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.68.9e-083403732154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp++e++++L +++gL+ +q+ +WF N+R +
  XP_009770426.1 340 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 373
                     469*****************************87 PP
2ELK28.92.5e-10294315122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++Y+++++++++E++
  XP_009770426.1 294 ELKHELKQGYKEKIVDIREEIL 315
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.1E-19128172IPR005540KNOX1
PfamPF037903.4E-17130171IPR005540KNOX1
SMARTSM012566.4E-25181237IPR005541KNOX2
PfamPF037911.1E-18187236IPR005541KNOX2
PROSITE profilePS512139.969294314IPR005539ELK domain
PfamPF037898.9E-7294315IPR005539ELK domain
SMARTSM011886.1E-4294315IPR005539ELK domain
PROSITE profilePS5007111.726314377IPR001356Homeobox domain
SuperFamilySSF466894.71E-16316380IPR009057Homeodomain-like
SMARTSM003894.7E-11316381IPR001356Homeobox domain
CDDcd000861.50E-10317378No hitNo description
Gene3DG3DSA:1.10.10.603.2E-25321378IPR009057Homeodomain-like
PfamPF059201.1E-17334373IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MAFQDHFSQE MATLHQQQQN AAVLRSMLPE DHQSPRKSPP TWLNTSLLRQ HSSAATVAAA  60
GVTGNNFLHL QTSNSDSSNS NNQWLSPTAA ASAGGGGGGG EEHNDVNTNN NSNSNNNNEE  120
GENSWEREKC KADILNHPLY DQLLSAHVSC LRIATPVDQL PRIDAQLAQS QNVVAKYSVL  180
GQGQPPLDDK DLDQFMTHYV LLLSSFKEQL QQHVRVHAME AVMACWELEQ SLQSLTGVAP  240
GEGTGATMSD DDDDQADSDT NFLDGGFDGS DSMGFGPLVP TESERSLMER VRQELKHELK  300
QGYKEKIVDI REEILRKRRA GKLPGDTTSV LKAWWQSHSK WPYPTEEDKA RLVQETGLQL  360
KQINNWFINQ RKRNWHSNPS TSTSQKSKRK R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1370390RKRNWHSNPSTSTSQKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3338400.0AB333840.1 Nicotiana tabacum NTH201 mRNA for class 2 knotted1-like protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770426.10.0PREDICTED: homeobox protein knotted-1-like LET12 isoform X3
SwissprotO223000.0LET12_SOLLC; Homeobox protein knotted-1-like LET12
TrEMBLA0A1U7VZN30.0A0A1U7VZN3_NICSY; homeobox protein knotted-1-like LET12 isoform X3
STRINGXP_009770424.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-145KNOTTED1-like homeobox gene 3