PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009770385.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 444aa MW: 50033.5 Da PI: 4.7447 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104.6 | 1.2e-32 | 59 | 198 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sg 81 lp+G++F+Ptd+e++++ L k g++ + +e+i++vd i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ + XP_009770385.1 59 LPRGVKFDPTDQEIIWHLLGKVEVGSRsshpfI--DEFIPTVDeddgICYTHPQNLP-GVKQDGSVSHFFHRAIKAYNTGTRKRRKIHgdnfgDV 150 799************776665544444565332..334666544556**********.677888899******************8655555588 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tg++k+v+ +g + g+kk++v+y + k+ekt+Wvmh+y+l XP_009770385.1 151 RWHKTGRTKPVIL-DGIQRGCKKIMVLYisPVKGGKAEKTNWVMHQYHL 198 8************.99************6545777888*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-38 | 45 | 217 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.831 | 59 | 217 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.2E-14 | 60 | 198 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MVMPCRPSWL VDSKRIATKI KSASGDPGAV NWKSNPTKAC PKCQFIIDNN DVSNDWPGLP 60 RGVKFDPTDQ EIIWHLLGKV EVGSRSSHPF IDEFIPTVDE DDGICYTHPQ NLPGVKQDGS 120 VSHFFHRAIK AYNTGTRKRR KIHGDNFGDV RWHKTGRTKP VILDGIQRGC KKIMVLYISP 180 VKGGKAEKTN WVMHQYHLGT GEDEREGEYV VSKVFYQQQQ QVKQGDKIEQ ELPEDADYLV 240 AKVDPHTPKS VTPEPPRGER ISSSMDARQQ IAASSISPTT QYHDVDYTED DMGALPYQTE 300 NQDQIIENQI DEDGTKVDNE TGDDPKWWDS ESQYLLDSQQ LVEGLSLCDD LLASQSPNRD 360 EHDNDTDKNK EKKCKPSLAD YAQLGPEDLK KDLEECQHLV LDPANIDMDT PPDFRLSQLE 420 FGSQDSYIAW GGSKFGFDSG EHVG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 1e-171 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009770385.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 isoform X1 | ||||
Refseq | XP_016456161.1 | 0.0 | PREDICTED: NAC domain-containing protein 8-like isoform X2 | ||||
Swissprot | Q6NQK2 | 0.0 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A1S3YV34 | 0.0 | A0A1S3YV34_TOBAC; NAC domain-containing protein 8-like isoform X2 | ||||
TrEMBL | A0A1U7W808 | 0.0 | A0A1U7W808_NICSY; NAC domain-containing protein 8 isoform X1 | ||||
STRING | XP_009770385.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8162 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-173 | NAC family protein |