PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009770245.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CPP
Protein Properties Length: 826aa    MW: 89580.1 Da    PI: 5.858
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009770245.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.83.3e-16525563240
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     ++k+CnCkkskClk+YCeCfaag++C e C C+dC+Nk 
  XP_009770245.1 525 SCKRCNCKKSKCLKLYCECFAAGVYCVEPCACQDCFNKP 563
                     689**********************************96 PP
2TCR512.8e-16611649139
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                     ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN 
  XP_009770245.1 611 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 649
                     589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.6E-17524565IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.777525651IPR005172CRC domain
PfamPF036381.0E-11527562IPR005172CRC domain
SMARTSM011147.5E-18611652IPR033467Tesmin/TSO1-like CXC domain
PfamPF036388.1E-12613649IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 826 aa     Download sequence    Send to blast
MSTEEEKVSL ERENVVEKES EELVEGRKCV KGGGVKAGVV VVMDTPERKK NQIATPISKF  60
EESPVFNFLN NLSPIKLDKS AHFTQTLNSL SFASIPSVFT SPHVSSIRES RFLRRHLLSD  120
PSKPEFASDN GVKVDTDEGM LDTVNNSIEP KESFGCGISG GEAPASPSHE CSKLAVELAR  180
SLNYECSSPS TLPTGGIRGK SLSEFAGTSV TYVPLVQEIS GKGLLRCEVN MDGTNEIVQD  240
KEEASGCDWE SLITDATDLL IFDSPGDPEA FTKASGPNFR TFEYVSNEMQ NVQHFSQVST  300
SECGGDGSET EKPSTQPGEE SQLKEYADAE NTKPDASLTN DSMCVGQSEK NDNEMVSALY  360
RGMRRRCLVF EMVGPRRKHI DEGSGSSAAQ EADGNVASND KQLVPSKTVN EYPRCTLPGI  420
GLHLNSLTAS SKDGKVVKQE ANASGKQLVI ASGSSINLHS LVTGQESLVK SLPETSRGGE  480
IVPFENSLPL MEDVLQAPGY VNSEEPNQTS PKKKRRRLET GESESCKRCN CKKSKCLKLY  540
CECFAAGVYC VEPCACQDCF NKPIHEDTVL ATRKQIESRN PLAFAPKVIR TTDSLSETTG  600
DDSSKTPASA RHKRGCNCKK SGCLKKYCEC YQGGVGCSIN CRCEGCKNAF GRKDGTDGDA  660
EEEETDAYEK SIVDRTSHKS LVQSDIEQNP DSAPPATPLS FGRPPMQLPF SLKNKPPRSS  720
FLSIGSSSGG IYAAGQGVGR PNFFQPQPKF DKPFESVQVQ EDEMPEILQG TKSPVSGIKT  780
ASPNRKRVSP PHCNYGNSHS HSPGRRSSRK LILQSIPSFP SLTPNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-1852964814120Protein lin-54 homolog
5fd3_B7e-1852964814120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1510517PKKKRRRL
2511516KKKRRR
3513517KRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770245.10.0PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2
TrEMBLA0A1U7W7L20.0A0A1U7W7L2_NICSY; protein tesmin/TSO1-like CXC 2 isoform X2
STRINGXP_009770238.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-127TESMIN/TSO1-like CXC 2