PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009769992.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | AP2 | ||||||||
Protein Properties | Length: 708aa MW: 79165.8 Da PI: 8.4451 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.7 | 3.7e-15 | 389 | 448 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+ ++ a++k++g XP_009769992.1 389 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARSYDLAALKYWG 448 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 40.9 | 5.2e-13 | 493 | 543 | 3 | 55 |
AP2 3 ykGV.rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV +++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_009769992.1 493 YRGVtSRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 543 9****99**********988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.23E-21 | 389 | 456 | No hit | No description |
Pfam | PF00847 | 5.0E-12 | 389 | 448 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-15 | 389 | 458 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.5E-28 | 390 | 462 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.9 | 390 | 456 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-15 | 390 | 457 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-6 | 391 | 402 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-16 | 491 | 553 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.61E-23 | 491 | 553 | No hit | No description |
SMART | SM00380 | 4.6E-31 | 492 | 557 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-18 | 492 | 551 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.098 | 492 | 551 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-7 | 493 | 543 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-6 | 533 | 553 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 708 aa Download sequence Send to blast |
MYSRTQSKRE KSKSKEGSRG WSIRKAKEDV FLKHRSQWNA GTMPGIPCWN SFFLFTGTPF 60 VLLGYFNSIA TKMKSLSNDD NSTNTNSNSH WLGFSLSPHI NSLEGPSPDQ HHTQPCSSDV 120 PSSVPIRFSP IPLTYPGMFY NTEGDNAAFL SSYSVMPLKS DGSLCIMKAF NRSQQPQGMA 180 SSTPKLEDFF GDASIGTHHY EDCNRGGMAH SLDNNIYYNQ HQENETSNSQ DFLNHFQDNS 240 RQQQQQHYPD FSAFLGHELY HPTEQGKTEC NPHVPTMPVD EMSGMNNWVS RNYQNPNAHA 300 LEQNMIGCMA DNGGESGSSG AMTYGDFKSL SLSMSPGSQS SCVTGTQQIS PTVADCIAME 360 TKKRGPAKVE NQKQIVHRKS IDTFGQRTSQ YRGVTRHRWT GRYEAHLWDN SCKKEGQSRK 420 GRQVYLGGYD MEEKAARSYD LAALKYWGPS THINFPLENY QQELEEMKNM TRQEYVANLR 480 RKSSGFSRGA SMYRGVTSRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK 540 FRGVNAVTNF DISRYDVERI MESNTLLAGE LARRKKDTET SKVISNQIVA NQNHIQNKKE 600 SGNVVDWTMT LHQSSAVGVD TNTMRPTLQE GDESARINTH LSNASSLVTS LGSSREGSPA 660 KNNSHSMHFA MPQSAPKLIT SPATNITSWI SSAQLRPNVP VFAAWTDA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-156 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009769992.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor ANT isoform X1 | ||||
Refseq | XP_009769993.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor ANT isoform X1 | ||||
Refseq | XP_009769994.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor ANT isoform X1 | ||||
Swissprot | Q38914 | 1e-141 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A1U7VQ11 | 0.0 | A0A1U7VQ11_NICSY; AP2-like ethylene-responsive transcription factor ANT isoform X1 | ||||
STRING | XP_009769992.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2074 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-129 | AP2 family protein |