PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009769917.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 422aa MW: 47691.8 Da PI: 7.989 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.2 | 7.9e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl XP_009769917.1 14 KGLWSPEEDEKLIKHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 44 | 5.1e-14 | 67 | 109 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg ++++E+ l++++++ lG++ W+ Ia +++ gRt++++k+ w+ XP_009769917.1 67 RGTFSQDEENLIIELHAVLGNK-WSQIATRLP-GRTDNEIKNLWN 109 899*******************.*********.*********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.5E-28 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.558 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.04E-12 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-12 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.723 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.7E-13 | 67 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.20E-8 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MGRHSCCYKQ KLRKGLWSPE EDEKLIKHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SQDEENLIIE LHAVLGNKWS QIATRLPGRT DNEIKNLWNS SIKKKLRQRG 120 IDPNTHKPLS EVENEEKASA NSNNKNTDKV SESSNNDQLN FVEAAHENGF SIEKPKSSSM 180 TIMDHYPLIE TNNIAPPTHE FFTTNCKSPY FSNYLSFQHL NNYTPNTNIL FNNKNSAHDM 240 VSDHQFNCSL SPMSNSILTT SPLARIKSPS LTTLPPDNSF NINKSQNWEA CTLSSNSNGS 300 SNSIELQSNC SFFDNNAAAF AWGSTTAHGS GKPEREEIKW SEYLQTPFSL GSNTIQNHQI 360 SSQHQDLYNN ETKSETQFMT QGSLGTTTTW LQNQPQESSL QNANLYNSNT YQRLPAAFGQ 420 FS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975513 | 4e-52 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009769917.1 | 0.0 | PREDICTED: transcription factor MYB86-like | ||||
Refseq | XP_016481027.1 | 0.0 | PREDICTED: transcription factor MYB86-like | ||||
TrEMBL | A0A1S4AWM6 | 0.0 | A0A1S4AWM6_TOBAC; transcription factor MYB86-like | ||||
TrEMBL | A0A1U7VPT3 | 0.0 | A0A1U7VPT3_NICSY; transcription factor MYB86-like | ||||
STRING | XP_009769917.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09540.1 | 2e-98 | myb domain protein 61 |