PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009769857.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 348aa MW: 38357.8 Da PI: 9.116

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009769857.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.1	6.4e-13	280	325	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +AveYIk+Lq XP_009769857.1 280 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 325 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.148	274	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.63E-16	277	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.42E-11	278	327	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.6E-15	279	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.8E-10	280	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.1E-13	280	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MDSEFDKNQN MNSGLLRFRS APSSLFENLT DGVIKIENFG SENKGFNLAG LNNQLVSQNS 60 QLPPQYPRQN TSANVGSTDG GGYRVMGSLG NNHERQNKLA SNLMRQNSSP AGLFSHLNSQ 120 IGYGTLKGGG GGGYRMANVA SGDSSPSSSR LKGHFSSFPS GTPSSLGMLS RISEVDNESS 180 ITTVPDDDKR RDGNSEAQFY NMGFPFTSWN DSPQLDNEGK LFANADQIEE VGNRPPILSH 240 HLSLPKTPAE IAAIEKLLHF QDTIPCKIRA KRGCATHPRS IAERVRRTRI SERMRKLQEL 300 VPNMDKQTNT ADMLDLAVEY IKDLQKQYKT LTDHRANCKC SAMQNQRV

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MDSEFDKNQN MNSGLLRFRS APSSLFENLT DGVIKIENFG SENKGFNLAG LNNQLVSQNS  60
QLPPQYPRQN TSANVGSTDG GGYRVMGSLG NNHERQNKLA SNLMRQNSSP AGLFSHLNSQ  120
IGYGTLKGGG GGGYRMANVA SGDSSPSSSR LKGHFSSFPS GTPSSLGMLS RISEVDNESS  180
ITTVPDDDKR RDGNSEAQFY NMGFPFTSWN DSPQLDNEGK LFANADQIEE VGNRPPILSH  240
HLSLPKTPAE IAAIEKLLHF QDTIPCKIRA KRGCATHPRS IAERVRRTRI SERMRKLQEL  300
VPNMDKQTNT ADMLDLAVEY IKDLQKQYKT LTDHRANCKC SAMQNQRV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	3e-71	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009769857.1	0.0	PREDICTED: transcription factor bHLH130-like isoform X1
Refseq	XP_009769864.1	0.0	PREDICTED: transcription factor bHLH130-like isoform X1
Refseq	XP_016504237.1	0.0	PREDICTED: transcription factor bHLH130-like isoform X1
Swissprot	Q66GR3	4e-78	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A1S4CSJ1	0.0	A0A1S4CSJ1_TOBAC; transcription factor bHLH130-like isoform X1
TrEMBL	A0A1U7W5F7	0.0	A0A1U7W5F7_NICSY; transcription factor bHLH130-like isoform X1
STRING	XP_009769857.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5194	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	9e-76	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]