PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009769625.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 362aa MW: 39444.6 Da PI: 6.5195

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009769625.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.4	4.2e-10	162	217	5	60
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 kr++r NR +A rs +RK +i eLe kv++L++e ++L +l + l+ XP_009769625.1 162 KRAKRILANRQSAARSKERKARYISELESKVQTLQTEATTLSAQLTLFQRDTTGLT 217 9****************************************999887766665555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-16	158	222	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.668	160	223	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.36E-11	162	213	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.8E-10	162	216	No hit	No description
Pfam	PF00170	1.3E-8	162	210	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.14E-21	163	212	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MQDPSHLNSV KLPNQPPSSF SAAAFRPSHH RRAHSEVNFR LPEDLDLESD PFDAPAGSFE 60 EIGSEDDFFS TYMDIEKLGS GGGSNSGSDA AAGGLENAGG SGGSSRVGAE SSDGEKSMMM 120 KPRHRHSHSV DSSSSLLLSE SIEAKKAMAP DKLAELWTID PKRAKRILAN RQSAARSKER 180 KARYISELES KVQTLQTEAT TLSAQLTLFQ RDTTGLTNEN TELKLRLQAM EQQAQLRDAR 240 NEALKQEVER LKIATGQISA SSDAYNSGMQ QISYNRPAFF PHQPQPGPSE PPNTLMPQFH 300 TLQGSMSNPR HTLLAGHAQA LTDAMQQDPL RRFQGLDINS RGSHLVKTEA PSISASESSS 360 TF

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MQDPSHLNSV KLPNQPPSSF SAAAFRPSHH RRAHSEVNFR LPEDLDLESD PFDAPAGSFE  60
EIGSEDDFFS TYMDIEKLGS GGGSNSGSDA AAGGLENAGG SGGSSRVGAE SSDGEKSMMM  120
KPRHRHSHSV DSSSSLLLSE SIEAKKAMAP DKLAELWTID PKRAKRILAN RQSAARSKER  180
KARYISELES KVQTLQTEAT TLSAQLTLFQ RDTTGLTNEN TELKLRLQAM EQQAQLRDAR  240
NEALKQEVER LKIATGQISA SSDAYNSGMQ QISYNRPAFF PHQPQPGPSE PPNTLMPQFH  300
TLQGSMSNPR HTLLAGHAQA LTDAMQQDPL RRFQGLDINS RGSHLVKTEA PSISASESSS  360
TF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	1e-117	HG975446.1 Solanum pennellii chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009769625.1	0.0	PREDICTED: transcription factor RF2b-like
Swissprot	O22873	1e-107	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A1U7W5S9	0.0	A0A1U7W5S9_NICSY; transcription factor RF2b-like
STRING	XP_009769625.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3425	23	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	2e-90	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]