PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009769608.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TALE

Protein Properties

Length: 752aa MW: 83263.4 Da PI: 6.8575

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009769608.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.5	2.5e-09	529	566	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + XP_009769608.1 529 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 566 664459******************************88 PP
2	BELL	121.5	3.7e-39	389	460	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+ +eVdkrY++y+eq+qtv++sF+ v+g g+a+pYt+lA+ka+SrhF+cLkdaia q+ XP_009769608.1 389 DRIEHQRRKVKLLSMFDEVDKRYNHYCEQMQTVVNSFDLVMGFGAAAPYTALAQKAMSRHFKCLKDAIAAQL 460 589******************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	6.4E-76	315	458	IPR006563	POX domain
Pfam	PF07526	1.4E-51	320	457	IPR006563	POX domain
PROSITE profile	PS50071	12.487	507	570	IPR001356	Homeobox domain
CDD	cd00086	2.35E-12	510	571	No hit	No description
SMART	SM00389	4.0E-9	510	574	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.84E-17	512	576	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.3E-28	513	576	IPR009057	Homeodomain-like
Pfam	PF05920	3.8E-18	527	566	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 752 aa Download sequence Send to blast
MVTPFNKFKA AHNPIQLPEK SNSLDNSMSQ DYHHQGLFSF SSVVERPQDE QQQQHIAHQI 60 RQEKLRVDGF NQPPPLVAIE EEQSSGLQVY GTAGMLSEMF NFPPGITTAA ATELLQNQLS 120 QCYRHPNQRP QQQQPPTTNL GSEWFSNRQG MVVGGSLQVP SESLDNSKVL NGRDSITAHY 180 QRQHNHISSI NVVESASAMN LFTINPQPRS PSPSSAHPTT TLQGVPNAIG GHFGQFICGG 240 ASNTGNHFNT PNDIGGVNVI EGQGLSLSLS SSLQHLEAAK VEDQLRMSGG EMLFFNQGES 300 QNHHRQIHVG FGSSLGPVNV LRNSKYAKAA QELLEEFCSV GRSQLFKKNK VSRNNNTTTS 360 SNPNFNNPSG SNNNNNNSSK DLSPLSAADR IEHQRRKVKL LSMFDEVDKR YNHYCEQMQT 420 VVNSFDLVMG FGAAAPYTAL AQKAMSRHFK CLKDAIAAQL KHSCELLGEK DATTSGLTKG 480 ETPRLKLLEK SLRQQQRAIH QMGMMDAEAW RPQRGLPERS VTILRAWLFE HFLHPYPSDA 540 DKHLLARQTG LSRNQVSNWF INARVRLWKP MVEDMYQKEA KDEEEEDDEN MEKSQNQNRS 600 NNIAQTPTPN SSTNTITTGY GTETKTAATV TAATILTVAS DKRSEINVPE NDPSIVAMNN 660 LCFSENHTEH HESSSRATHE MAHHSFPAIQ DSDGMSRREA VSGVEYGTTN IMAISDNGTR 720 MIRFGTSAAG DVSLTLGLHH AGDLPENTHF FG

Sequence ? help Back to Top

Protein Sequence Length: 752 aa Download sequence Send to blast

MVTPFNKFKA AHNPIQLPEK SNSLDNSMSQ DYHHQGLFSF SSVVERPQDE QQQQHIAHQI  60
RQEKLRVDGF NQPPPLVAIE EEQSSGLQVY GTAGMLSEMF NFPPGITTAA ATELLQNQLS  120
QCYRHPNQRP QQQQPPTTNL GSEWFSNRQG MVVGGSLQVP SESLDNSKVL NGRDSITAHY  180
QRQHNHISSI NVVESASAMN LFTINPQPRS PSPSSAHPTT TLQGVPNAIG GHFGQFICGG  240
ASNTGNHFNT PNDIGGVNVI EGQGLSLSLS SSLQHLEAAK VEDQLRMSGG EMLFFNQGES  300
QNHHRQIHVG FGSSLGPVNV LRNSKYAKAA QELLEEFCSV GRSQLFKKNK VSRNNNTTTS  360
SNPNFNNPSG SNNNNNNSSK DLSPLSAADR IEHQRRKVKL LSMFDEVDKR YNHYCEQMQT  420
VVNSFDLVMG FGAAAPYTAL AQKAMSRHFK CLKDAIAAQL KHSCELLGEK DATTSGLTKG  480
ETPRLKLLEK SLRQQQRAIH QMGMMDAEAW RPQRGLPERS VTILRAWLFE HFLHPYPSDA  540
DKHLLARQTG LSRNQVSNWF INARVRLWKP MVEDMYQKEA KDEEEEDDEN MEKSQNQNRS  600
NNIAQTPTPN SSTNTITTGY GTETKTAATV TAATILTVAS DKRSEINVPE NDPSIVAMNN  660
LCFSENHTEH HESSSRATHE MAHHSFPAIQ DSDGMSRREA VSGVEYGTTN IMAISDNGTR  720
MIRFGTSAAG DVSLTLGLHH AGDLPENTHF FG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	3e-15	516	573	5	62	Homeobox protein Meis2
3k2a_B	3e-15	516	573	5	62	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009769608.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Swissprot	Q9SW80	1e-142	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A1U7VTC8	0.0	A0A1U7VTC8_NICSY; BEL1-like homeodomain protein 4
STRING	XP_009769608.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3341	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-131	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]