PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009769362.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 229aa MW: 25981.6 Da PI: 9.5827 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.3 | 3.8e-15 | 78 | 162 | 5 | 94 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +++++ l+++ l lp +fa+e+++ +++ t++++de sW++ l +++++++++ W++F+ angLkegD ++++ + +++++ + XP_009769362.1 78 TIKPYCLSKSFLQLPGPFARENDLRNRK-CTIKIRDE-QMSWTFSL--YSSGSHTFIGGVWSKFCIANGLKEGDQIMLEIVA-NGKNPIL 162 56889999999***********988655.59*****5.579*****..88888899***********************876.4444555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.0E-15 | 71 | 162 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.94E-16 | 72 | 162 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.21E-13 | 73 | 152 | No hit | No description |
SMART | SM01019 | 1.0E-12 | 74 | 168 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.152 | 74 | 167 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-13 | 78 | 163 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MEFEVSIFGS SKCEREYEQP LQGVSEGEEE RDHSCKKITP QVNTTEKSKL NIKSSHKAFP 60 NVEAAQDMPL DRPYFIYTIK PYCLSKSFLQ LPGPFAREND LRNRKCTIKI RDEQMSWTFS 120 LYSSGSHTFI GGVWSKFCIA NGLKEGDQIM LEIVANGKNP ILKVDDLMGN ASLQPKGKKT 180 NFDTKRVSTE DLRANASRQR EGKKPKLDAR RVSTRVSSSG FCKIKWLGE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009769362.1 | 1e-172 | PREDICTED: B3 domain-containing protein REM2-like isoform X3 | ||||
TrEMBL | A0A1U7VN82 | 1e-171 | A0A1U7VN82_NICSY; B3 domain-containing protein REM2-like isoform X3 | ||||
STRING | XP_009769360.1 | 1e-159 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31630.1 | 7e-14 | B3 family protein |