PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009769112.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family BES1
Protein Properties Length: 664aa    MW: 75162.6 Da    PI: 6.3694
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009769112.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822153.81.2e-47551993144
          DUF822   3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspesslq 95 
                     + rk+++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+ve+DGttyr++   +  ++a+ +g  + +s+e s++
  XP_009769112.1  55 KSRKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPVRADMNDVLAALARQAGWTVEPDGTTYRQSPPTTtnNNASNMGPYQVMSVECSVS 149
                     789*****************************************************************9877667678889999999***99999 PP

          DUF822  96 .sslkssalaspvesysaspksssfpspssldsislasaasllpvlsvls 144
                      ssl+++++++ v+   ++p+ ++++sp+s+dsi ++++ +    ++ +s
  XP_009769112.1 150 gSSLRNCSTRASVDCHPSVPRINESLSPASFDSIVVTESDTKADKFTCTS 199
                     9**********************************998844443333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.9E-4955203IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.44E-156226658IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.803.8E-170228657IPR013781Glycoside hydrolase, catalytic domain
PfamPF013732.1E-81249620IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.5E-53265279IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.5E-53286304IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.5E-53308329IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.5E-53401423IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.5E-53474493IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.5E-53508524IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.5E-53525536IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.5E-53543566IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.5E-53579601IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MNNHIPHHPI PNTQDPDPQF PNPNEDPNPN PPPQPQPRRP RGFAATNTAA GVTNKSRKER  60
EKEKERTKLR ERHRRAITSR MLAGLRQYGN FPLPVRADMN DVLAALARQA GWTVEPDGTT  120
YRQSPPTTTN NNASNMGPYQ VMSVECSVSG SSLRNCSTRA SVDCHPSVPR INESLSPASF  180
DSIVVTESDT KADKFTCTST MNSTECLEAG QLMQELHSGE HGIGLSGTPY VPVFVMLSSG  240
LINNFCQLMD PDSVKQELQQ LKSLKIDGVM VNCWWGIVES WVPQKYEWSG YRELFNIIRD  300
FKLKLQVVMA FHEYGGIDTS GMFISLPQWV MEIGKGNQDI FFTDRQGRRN TECLSWGIDK  360
ERVLRGRTAI EVYFDMMRSF RTEFDDLFAD GLISAVEIGL GASGELKYPS FSERMGWRYP  420
GIGEFQCYDK YSLQNLRKAA TSRGHSFWAK GPDNAGYYNS KPHETGFFCE RGDYDSYYGR  480
FFLHWYRQVL IDHADNVLSL ATLAFEGVQI VVKIPAIYWW YRTSSHAAEV TAGYYNPTNQ  540
DGYSPVFEVL KKHSMTVKFI CSGFQVPETD DALADPDGLS WQILNSAWDK ALPVAGQNTF  600
PCYDREGLMR LVETAKPRND PDHHRFSFFA FQQPSPLVQS AICISELDYF IKSMHGEIIN  660
NVES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1v3i_A1e-12123061811401Beta-amylase
1wdq_A1e-12123061811401Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769112.10.0PREDICTED: beta-amylase 8
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A1U7VMD10.0A0A1U7VMD1_NICSY; Beta-amylase
STRINGXP_009769112.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]