PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009769104.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 438aa    MW: 50130.9 Da    PI: 5.145
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009769104.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1118.3e-35201102101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+ye+++d+ ++ ++sw++ng+sfvv+++ efa+++LpkyFkh+nf+SF+RQLn+YgF+kv+ e+         weF++++F +g+++ll++
  XP_009769104.1  20 FLSKTYELVDDPYTNPVVSWNHNGRSFVVWNPPEFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANEEFLRGQRHLLKN 105
                     9***************************************************************9998.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i r+k
  XP_009769104.1 106 IYRRK 110
                     ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-3813104IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.17E-3516109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.1E-6016109IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.2E-3120109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-202043IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-205870IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405983IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-207183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MVGIVMDNCN SGSSSAPAPF LSKTYELVDD PYTNPVVSWN HNGRSFVVWN PPEFARDLLP  60
KYFKHNNFSS FIRQLNTYGF RKVDPEQWEF ANEEFLRGQR HLLKNIYRRK PIHSHSATGS  120
QSVAPLTDSE RQEYEEEIER LKRENSLLQS SAEKHEKFNQ EYEFGVKSME QRLQTIVQRQ  180
GKLISLLAQL LQRPEFSSDF IQYTNNNSKK RRLLVSNYLI EEENATNSIV GPKLDIEIVK  240
KLESSINFWE RFLYGIRKTP TEDQMYDFEH TQPLPSPIVI REMDTSSDDS GKRNSPIDHS  300
SSPSRDIQSS PELGGPLSPV ISSIYINLEC HLKPSDQTNA NTKITSTMSI DATKNQAEGN  360
TDMSKSVSNS GNDVFWQQFL TETPGLSEPQ EVEMVSKDIN GLTCDSMLAE NQRYWWSRGF  420
NVENLAERMG LLSPATES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-261110921129Heat shock factor protein 1
5d5v_B7e-261110921129Heat shock factor protein 1
5d5v_D7e-261110921129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769104.10.0PREDICTED: heat stress transcription factor A-4b-like
RefseqXP_016493667.10.0PREDICTED: heat stress transcription factor A-4b-like
TrEMBLA0A1S4BXN70.0A0A1S4BXN7_TOBAC; heat stress transcription factor A-4b-like
TrEMBLA0A1U7W3A40.0A0A1U7W3A4_NICSY; heat stress transcription factor A-4b-like
STRINGXP_009769104.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84352329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.13e-71HSF family protein