PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009768979.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 361aa    MW: 40847.1 Da    PI: 5.4077
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009768979.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY919.2e-29133193259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs++dp+v+eitY+g+H+++
  XP_009768979.1 133 DDGYSWRKYGQKDILGAKYPRSYYRCTYRhmqNCWTTKQVQRSDDDPTVFEITYKGSHTCH 193
                     8**************************99899***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.5E-28123194IPR003657WRKY domain
SuperFamilySSF1182905.23E-25131194IPR003657WRKY domain
SMARTSM007747.4E-39132194IPR003657WRKY domain
PfamPF031065.7E-26133193IPR003657WRKY domain
PROSITE profilePS5081121.184133190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDCAFNWEYN TLINELTQGI EHTKQLRAYL RSMPSISENQ ELLLQKILSS YEQSLLILKC  60
SGSAVQSPQP LPQTCGAIES SVSVDGSPRS DDKKRSFKDQ QELINISKKR KSQPTWTEQV  120
KVSAETGFEG PTDDGYSWRK YGQKDILGAK YPRSYYRCTY RHMQNCWTTK QVQRSDDDPT  180
VFEITYKGSH TCHQATNSAL QPKSPENQEF KKQANYQTGQ YSNEVLMNLR ANLRVDTNDL  240
DKTETTAACS FSFPPTFSSL TDENQHFQIS HVDENLMIGG GYSPSFVSPT TPESNYFSIS  300
SSCQMNGFGM VHNVHRSESD LTDIFSANTS STSSPIVGSE FSLDHFELDP NFPFDNPRFF  360
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-19133192968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192110KKRSFKDQQELINISKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768979.10.0PREDICTED: probable WRKY transcription factor 53
RefseqXP_016508373.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLA0A1S4D4V30.0A0A1S4D4V3_TOBAC; probable WRKY transcription factor 53
TrEMBLA0A1U7W2Y30.0A0A1U7W2Y3_NICSY; probable WRKY transcription factor 53
STRINGXP_009768979.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.15e-65WRKY family protein