PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009768958.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 363aa    MW: 39881.7 Da    PI: 6.3089
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009768958.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.5e-31180238259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+++ gC+++k+ver+++dp+++++tY++eHnh+
  XP_009768958.1 180 SDMWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSARKQVERNRSDPNMFIVTYTSEHNHP 238
                     79************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-31170240IPR003657WRKY domain
PROSITE profilePS5081134.681174240IPR003657WRKY domain
SuperFamilySSF1182908.11E-27177240IPR003657WRKY domain
SMARTSM007743.2E-37179239IPR003657WRKY domain
PfamPF031061.9E-26181238IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MEDDWDLHAV VRGCAASSTA ATTTTTTSTA ATTTTPTTFC SFQPRQDGNF FSFQDPFVPR  60
FDNPNNTAFE ELHNLYKPFF PKSQPQQQAP LSPQNIPISP LSVLGGLQDL SPQQTLIKQQ  120
QQQHIHQLNT RVLTQPKQSL SVNGSTNSTT SVSHTQSPRP KRRKNQLKKV CQVPAEGLSS  180
DMWSWRKYGQ KPIKGSPYPR GYYRCSTSKG CSARKQVERN RSDPNMFIVT YTSEHNHPMP  240
THRNSLAGST RQKPVNSEAG TPSDSNKPTS SSPVSSPACN SPATGKQDSS REEKEDIFED  300
DDDEFGSSNM GLDNMEPADD DFFEGLEELA ANATGDCFSD NFPGSVQFPW LTNNATTTAA  360
GGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-24164241280Disease resistance protein RRS1
5w3x_D1e-24164241280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768958.10.0PREDICTED: WRKY transcription factor 22-like
RefseqXP_016487160.10.0PREDICTED: WRKY transcription factor 22-like
TrEMBLA0A1S4BE050.0A0A1S4BE05_TOBAC; WRKY transcription factor 22-like
TrEMBLA0A1U7VRD30.0A0A1U7VRD3_NICSY; WRKY transcription factor 22-like
STRINGXP_009768958.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25912457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-59WRKY family protein