PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009768847.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 245aa MW: 28323.2 Da PI: 9.0135

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009768847.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	146.7	1.2e-45	14	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF+Pt+ee+v +yL +k+ + +l++ ++i+e++i+k++PwdLp + e++ yfFs+++ ky++g+r+nrat+sg Wk tg dk+++++ XP_009768847.1 14 LPPGFRFQPTEEEIVFQYLIRKTFSCPLPA-SIIPEINICKHDPWDLPGDI---EQDRYFFSNKEAKYRNGNRSNRATSSGCWKPTGLDKQITCS 104 79**************************.89***********554...5689*******************************98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ g+kktLvfykg+++++++t+W+mheyrl XP_009768847.1 105 kRKPILGMKKTLVFYKGKSSHASRTEWIMHEYRL 138 345559************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.14E-51	11	173	IPR003441	NAC domain
PROSITE profile	PS51005	49.43	14	173	IPR003441	NAC domain
Pfam	PF02365	6.7E-24	15	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MDKFNFVKDG AIKLPPGFRF QPTEEEIVFQ YLIRKTFSCP LPASIIPEIN ICKHDPWDLP 60 GDIEQDRYFF SNKEAKYRNG NRSNRATSSG CWKPTGLDKQ ITCSKRKPIL GMKKTLVFYK 120 GKSSHASRTE WIMHEYRLVL PKNQPFNFHH FKKSSQSSMV QIGNWVLCHI FMKRRNGKCD 180 QDILEADHQH VQTPKQTLYY DFMREDLSYR AISSCSSSLS NDDSSEVSSS PSGLVEHEEA 240 SNRAL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-41	12	174	15	166	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-41	12	174	15	166	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-41	12	174	15	166	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-41	12	174	15	166	NO APICAL MERISTEM PROTEIN
3swm_A	4e-41	12	178	18	173	NAC domain-containing protein 19
3swm_B	4e-41	12	178	18	173	NAC domain-containing protein 19
3swm_C	4e-41	12	178	18	173	NAC domain-containing protein 19
3swm_D	4e-41	12	178	18	173	NAC domain-containing protein 19
3swp_A	4e-41	12	178	18	173	NAC domain-containing protein 19
3swp_B	4e-41	12	178	18	173	NAC domain-containing protein 19
3swp_C	4e-41	12	178	18	173	NAC domain-containing protein 19
3swp_D	4e-41	12	178	18	173	NAC domain-containing protein 19
4dul_A	4e-41	12	174	15	166	NAC domain-containing protein 19
4dul_B	4e-41	12	174	15	166	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009768847.1	0.0	PREDICTED: NAC domain-containing protein 18
Refseq	XP_016482046.1	0.0	PREDICTED: NAC domain-containing protein 83-like
Swissprot	Q9FY93	2e-72	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A1S4AZF9	0.0	A0A1S4AZF9_TOBAC; NAC domain-containing protein 83-like
TrEMBL	A0A1U7VLI3	0.0	A0A1U7VLI3_NICSY; NAC domain-containing protein 18
STRING	XP_009768847.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1387	23	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	5e-74	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]