PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009768616.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 431aa MW: 48199.9 Da PI: 4.2705 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 6.1e-19 | 49 | 98 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g XP_009768616.1 49 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 98 789******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.32E-31 | 48 | 105 | No hit | No description |
SuperFamily | SSF54171 | 2.81E-19 | 49 | 107 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-36 | 49 | 112 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-13 | 49 | 98 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-27 | 49 | 105 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.559 | 49 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-8 | 50 | 61 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-8 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MARKRRASEG LGENKTRDDD QAGNAAWEEM VKEAAAAAAL GGARRARKRF VGVRQRPSGR 60 WVAEIKDTIQ KIRVWLGTFD TAEEAARAYD EAACLLRGAN TRTNFWPSSS SSSSTPALPS 120 KITNLLLNRL KARNNSLAAA AAAASSSDSS APVEIRDQDK QLEEYRDETA YFSDSQFMEY 180 LKDPEDQITD NSMNTNTSAI AMNNFTNTLE ACLTENDYSV VQPVMKSDEI NWSGGEINNN 240 PVEEDAQEEE ESEEENDSTD IGDVEPIDFH FVDEIESSCY YSPFEIAEEI NSADTMDQLG 300 MVYGDESLMI SEAMRRMNYE RKFSASLYAF NGISECLKLK LKSGGVMQRE RSEQLSRLRN 360 ACKRNRKEEE EDEKKINEEG IGTKMGERKE TECSSQSSSE TGQSSLSEIT YESELSLWSS 420 IDLPPICAFF T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-12 | 49 | 105 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009768616.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like | ||||
Refseq | XP_016469958.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like | ||||
TrEMBL | A0A1S4A002 | 0.0 | A0A1S4A002_TOBAC; ethylene-responsive transcription factor RAP2-12-like | ||||
TrEMBL | A0A1U7VUI7 | 0.0 | A0A1U7VUI7_NICSY; ethylene-responsive transcription factor RAP2-12-like | ||||
STRING | XP_009768616.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4310 | 20 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-21 | related to AP2 11 |