PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009768393.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 180aa    MW: 19544.2 Da    PI: 10.5163
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009768393.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.96.5e-192961133
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33
                    C+ CgttkTplWR gp g+k+LCnaCG++ rkk
  XP_009768393.1 29 CADCGTTKTPLWRGGPAGPKSLCNACGIKSRKK 61
                    *******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.52E-122362No hitNo description
PROSITE profilePS5011412.7432359IPR000679Zinc finger, GATA-type
SMARTSM004015.8E-142373IPR000679Zinc finger, GATA-type
CDDcd002021.19E-112863No hitNo description
Gene3DG3DSA:3.30.50.106.9E-152861IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS0034402954IPR000679Zinc finger, GATA-type
PfamPF003208.3E-172962IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MVDLSDKGIR SEEMSSETSS PERNDVKTCA DCGTTKTPLW RGGPAGPKSL CNACGIKSRK  60
KIRALLGLNK EDKKSKAFGN KSIGLQHQSC NSSSNSSSGD SSRSSSFGKK TISSSLKSKV  120
FPFGREVILQ KPRSSSTQKR KLGDVEQAAF LLMALSCGSF CNKYNNYASI RNKFVDHMKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768393.11e-129PREDICTED: GATA transcription factor 15-like isoform X1
RefseqXP_016486367.11e-129PREDICTED: GATA transcription factor 15-like
TrEMBLA0A1S4BBX01e-128A0A1S4BBX0_TOBAC; GATA transcription factor 15-like
TrEMBLA0A1U7VPR61e-128A0A1U7VPR6_NICSY; GATA transcription factor 15-like isoform X1
STRINGXP_009768393.11e-128(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19992362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-32GATA transcription factor 15