PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009768363.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CO-like
Protein Properties Length: 404aa    MW: 44322.2 Da    PI: 4.8245
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009768363.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.12.8e-06444539
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    +C+ ++e++ + +C+++  +lC +C  + H+       H++
  XP_009768363.1  4 TCEFCGEQRSIVYCRSDAACLCLSCDRNVHSAnalsqrHSR 44
                    7*****************************65677777765 PP
2zf-B_box25.72.4e-084688440
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     +C++++++++++ C + +  lC++C   +H +      H+++
  XP_009768363.1 46 LVCERCNSQPAIFRCIEERISLCQNCDWIGHANsssgstHKRQ 88
                    68*****************************888888999876 PP
3CCT61.33.2e-21347390144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R  a+lRYkeK+ktR+F+K++rY+sRKa+A+ R RvKGrFvk+ 
  XP_009768363.1 347 RSDAVLRYKEKKKTRQFDKRVRYASRKARADVRRRVKGRFVKAG 390
                     889**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.271147IPR000315B-box-type zinc finger
SMARTSM003362.1E-7447IPR000315B-box-type zinc finger
CDDcd000219.58E-7547No hitNo description
PROSITE profilePS501198.7174390IPR000315B-box-type zinc finger
CDDcd000210.004364790No hitNo description
PfamPF062036.9E-16347389IPR010402CCT domain
PROSITE profilePS5101715.16347389IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MGYTCEFCGE QRSIVYCRSD AACLCLSCDR NVHSANALSQ RHSRTLVCER CNSQPAIFRC  60
IEERISLCQN CDWIGHANSS SGSTHKRQAL SCYTGCPSAV ELSTIWSFLL DNPSVGDSTC  120
EQGMGSMSIT DCRSGDSRGS QAKDKSQDMS VAVEANDFMG SSMPSLDNKL HNVEPPGGST  180
NLTWSKVCNS GTKGSNLFDD DPFYDDFNMD EVDLSIGNYE ELFGVSLDNP DQLFKNEDID  240
GLFGMKDMPV AESSCQGDNA VEGSAVRRVN TVQPACSNAA SEESMMSCKT EPALCFARQQ  300
SNLSVSNLTG ESSAGDYQDC GASSMLLMGE PPWCSPCPEI SMPSTSRSDA VLRYKEKKKT  360
RQFDKRVRYA SRKARADVRR RVKGRFVKAG DAYDYDPLSE TRSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-128HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9755191e-128HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768363.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_009768364.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_016460896.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_016460897.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_016460898.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9LUA91e-135COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A1S3Z9K50.0A0A1S3Z9K5_TOBAC; zinc finger protein CONSTANS-LIKE 9-like
TrEMBLA0A1U7VPN60.0A0A1U7VPN6_NICSY; zinc finger protein CONSTANS-LIKE 9-like
STRINGXP_009768363.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-124B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]