PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009768311.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-other
Protein Properties Length: 339aa    MW: 38441.3 Da    PI: 4.9289
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009768311.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.14e-10275322653
                     S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
        Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                     +++k qle+Le+++++++ p+ +++  + + ++L+ ++V  WF  rR 
  XP_009768311.1 275 RIKKVQLETLEQVYRRSKRPTNAMISSIVHVTNLPRKRVLKWFEDRRS 322
                     68899******************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.025267327IPR001356Homeobox domain
SuperFamilySSF466897.7E-10269328IPR009057Homeodomain-like
CDDcd000864.32E-7270321No hitNo description
SMARTSM003891.5E-4273331IPR001356Homeobox domain
PfamPF000461.2E-7275322IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.2E-9275324IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0009414Biological Processresponse to water deprivation
GO:0009682Biological Processinduced systemic resistance
GO:0009787Biological Processregulation of abscisic acid-activated signaling pathway
GO:0010118Biological Processstomatal movement
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000071Biological Processregulation of defense response by callose deposition
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MASASTTLRI SITLRCSTND LHLLAGQPRS RTNVVLPLHS SSSRPSSSVL TFSRRRSNSA  60
NSAITSSKKK KKSPPTIDTE ENGDIDEDAF EALFQLLEED LKNDDLSLND DDISEEDLAK  120
LERELEEALK DDELLGEIAS IANEKIESED EDEEVVANDD NEDDKDEELP VKLKNWQLKK  180
LGYALRKGRR KTNIKNLAAE LCLDRAIVLE LLRNPPPNLL LLSDALPDEP VPRMIEPESK  240
PQETVPIEIS DVARLEAKVE TPVHVMQSSW SAQKRIKKVQ LETLEQVYRR SKRPTNAMIS  300
SIVHVTNLPR KRVLKWFEDR RSEEGVPDHR RPYQPLSKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15371RRRSNSANSAITSSKKKKK
Functional Description ? help Back to Top
Source Description
UniProtMay modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250|UniProtKB:Q70Z19, ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769, ECO:0000269|PubMed:20836879, ECO:0000269|PubMed:21564353}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092651e-109AP009265.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0027D09, complete sequence.
GenBankHG9755201e-109HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768311.10.0PREDICTED: uncharacterized protein LOC104219341 isoform X1
RefseqXP_009768312.10.0PREDICTED: uncharacterized protein LOC104219341 isoform X1
RefseqXP_009768313.10.0PREDICTED: uncharacterized protein LOC104219341 isoform X1
SwissprotQ8H0V54e-77OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBLA0A1U7VJT10.0A0A1U7VJT1_NICSY; uncharacterized protein LOC104219341 isoform X1
STRINGXP_009768311.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94282327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.13e-55overexpressor of cationic peroxidase 3
Publications ? help Back to Top
  1. García-Andrade J,Ramírez V,López A,Vera P
    Mediated plastid RNA editing in plant immunity.
    PLoS Pathog., 2013. 9(10): p. e1003713
    [PMID:24204264]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gamir J,Pastor V,Kaever A,Cerezo M,Flors V
    Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina.
    Plant J., 2014. 78(2): p. 227-40
    [PMID:24506441]