PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009768127.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 486aa    MW: 54066.2 Da    PI: 5.7311
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009768127.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.2e-14302345755
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       Er+RR+ri+++++ Lr l+P+ +      K++K++iL  A++YI++Lq
  XP_009768127.1 302 VTERKRRNRIKDGLFALRALVPNiS------KMDKVAILGDAIDYINELQ 345
                     57*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.7E-188155IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000833.89E-14293349No hitNo description
PROSITE profilePS5088815.605295344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-17297362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-15301350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-17302363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-11303345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MERALEWLRP LVDSNNWEYC VVWKLGDDPS RFIEWIGCCC AGAKAVDVNV KKENGGQLTF  60
TTLCRDSQIQ HPIRTKACEA LAHFPLSISL YSGIQGEVVT SNEPKWINHT EVSNSNLSHE  120
LKGTLVLIPV AGGLVELYNS KLIYKDQKTI DFIINRFKLG SENANSSTAK REDQPLDSFP  180
FEKLLFCAPP LQYTSFPSSA PLISQVSESS ANPSIQGSPT GSIPSNELTL CHSTSDHLSR  240
NIPLSRCSDG DFEHTELQCS GNLSRMEGTV FPWNQENYII AGDGYTMGKK RQRGPYQSKN  300
LVTERKRRNR IKDGLFALRA LVPNISKMDK VAILGDAIDY INELQENVKL YQAELNEIAA  360
EVSNNESSEV VLSDMSEMSK VTGPANEKTQ ISLNTTKRTR MEFLMKGQVE VNQIGAREFL  420
LKVFGSHKPG GFTQLLEAMN SLGLEVVNTN FTTSGEEILS IFIARANENR VVEAQQLRSS  480
LIELTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1287293GKKRQRG
2288307KKRQRGPYQSKNLVTERKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768127.10.0PREDICTED: transcription factor bHLH90 isoform X3
TrEMBLA0A1U7VJ710.0A0A1U7VJ71_NICSY; transcription factor bHLH90 isoform X3
STRINGXP_009768125.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.15e-77bHLH family protein