PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009768106.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 513aa    MW: 56386.1 Da    PI: 6.9975
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009768106.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-30227282359
                     -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     DgynWrKYGqK+vk se+prsYY+Ct+ +Cpvkkkve s  d++++eitY+g+Hnhe
  XP_009768106.1 227 DGYNWRKYGQKMVKASECPRSYYKCTHLKCPVKKKVELSI-DGHITEITYKGHHNHE 282
                     9***************************************.***************7 PP
2WRKY104.94.2e-33399457159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDg++WrKYGqK+vkg+++prsYYrCt++gC+v+k+ver++ dpk+v++tYeg+Hnh+
  XP_009768106.1 399 LDDGFKWRKYGQKVVKGNHHPRSYYRCTYPGCNVRKHVERASADPKAVITTYEGKHNHD 457
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-26221284IPR003657WRKY domain
SuperFamilySSF1182904.18E-24224284IPR003657WRKY domain
SMARTSM007742.5E-32225283IPR003657WRKY domain
PfamPF031061.7E-22227282IPR003657WRKY domain
PROSITE profilePS5081121.631227284IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-36385459IPR003657WRKY domain
SuperFamilySSF1182901.83E-29391459IPR003657WRKY domain
PROSITE profilePS5081135.898394459IPR003657WRKY domain
SMARTSM007741.2E-39399458IPR003657WRKY domain
PfamPF031068.3E-26400457IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MGEKFKASAV SELTIPPRAP NFEAFFGGGN MPYFSPGPMT LVSSFFSESE YPSFSQLLAG  60
AMASPLAKPP TLFPENSTGE ENCKEGNQKN LGYKQNQPMS LMLAQNSPLF MIPTGLTPSG  120
LLNSPGFLSP LQSPFGMSHQ QALAHVTAQA ALSQSYLQTQ AEYHFSSQGT SAQVLGIETS  180
TEPSECSLQP QLDAVPSDQQ TKKIELPLVS QSEDKPSFAS VDRPACDGYN WRKYGQKMVK  240
ASECPRSYYK CTHLKCPVKK KVELSIDGHI TEITYKGHHN HELPQPSKRR RDSCAQDGSD  300
CSKAKPESEM LSGTEVNGLN GALPGRSGQV STEMASGLLL SNECDKIEDT ATAAEEGHDD  360
EPNVKRMKTA VEAPNLASSH KAVSESKIVV QTRSEVDILD DGFKWRKYGQ KVVKGNHHPR  420
SYYRCTYPGC NVRKHVERAS ADPKAVITTY EGKHNHDIPI ARNRSHSTAQ DSTRQLNEQD  480
VATWRPSLHE NVAFHNNNEI PVCRQLKEEQ IAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-37227459877Probable WRKY transcription factor 4
2lex_A6e-37227459877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7111350.0AB711135.1 Nicotiana benthamiana NbWRKY14 mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768106.10.0PREDICTED: probable WRKY transcription factor 4
RefseqXP_016502077.10.0PREDICTED: probable WRKY transcription factor 4
TrEMBLA0A1S4CLE80.0A0A1S4CLE8_TOBAC; probable WRKY transcription factor 4
TrEMBLA0A1U7VT370.0A0A1U7VT37_NICSY; probable WRKY transcription factor 4
STRINGXP_009768106.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43142344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-119WRKY DNA-binding protein 4