PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009768032.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 95aa MW: 10874.9 Da PI: 10.7112 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56 | 5.2e-18 | 38 | 73 | 14 | 49 |
HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 14 skRrngilKKAeELSvLCdaevaviifsstgklyey 49 skRr g++KKA+EL++LC++e+a+i++s+ k++ + XP_009768032.1 38 SKRRSGLFKKASELCTLCGVEIAIIVYSPARKVFSF 73 9*****************************999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-9 | 32 | 76 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.278 | 35 | 77 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-18 | 38 | 73 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.06E-19 | 38 | 90 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-10 | 39 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-10 | 54 | 75 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
MIVFRLQLKN KITYSISNIG RYLLFSLTII YLNIILISKR RSGLFKKASE LCTLCGVEIA 60 IIVYSPARKV FSFGHPNVES IVDRFLSRNH NPISN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC240204 | 5e-45 | AC240204.1 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-33m2 map 1, complete sequence. | |||
GenBank | HG975513 | 5e-45 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009768032.1 | 2e-62 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 2e-25 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1U7VIY6 | 6e-61 | A0A1U7VIY6_NICSY; agamous-like MADS-box protein AGL62 | ||||
STRING | XP_009768032.1 | 9e-62 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 7e-28 | AGAMOUS-like 62 |
Publications ? help Back to Top | |||
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