PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009767939.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 717aa    MW: 80122.4 Da    PI: 6.6282
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009767939.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26068.81.2e-2162069525100
          DUF260  25 eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                     ++ +++a v k++ +++++++l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i +lq+q++ l+ +la++++e
  XP_009767939.1 620 DELERLAKVSKFYDRAELQEFLQKLPEHQRGDAVSSMVYEANARVRDPVYGCVGAIASLQNQVSLLQMQLAVAQAE 695
                     5678999****************************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089111.931593696IPR004883Lateral organ boundaries, LOB
PfamPF031957.5E-21618693IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MAGRNEAFRI CGSVSEALSY MPCPLQYTEP NTKNDLWVFW SQHNNEFPSV FPSTADTTIY  60
HDSIKEKIAS ALKNAYISDN FGCWLVQFWA PVTTKDQVFL TTCDLPFGLT KLHEGLCFYR  120
SECLKFRIPI VTDCSENEYR LGPTERVFKH GLPKMSPDIS RYSVADFPQH GSALIAGLGN  180
YLAVPVFEPL SNERAGVLEI IGDKKGSFSQ DFVQMVYEML NKVDLRSSNI YGHPDKKQGL  240
RGLERALKEI EEQLSFICRT HQLPLAQTWL PILDGSSIKR FMTTKEQFCI CTSAGYEFRA  300
ACDMFHLGKS QGVVSKAFLT RSSCFCSDIT QLSMIEYPLA HVAHRVGLHS SFAMCLQSSY  360
TGDYVYLLEF FLPQDNKSDC RSPQTILNML LASMERQFRS FKLASGQKLG EKLSVEIIPV  420
PSDDGLNSFE ICHGVKPLSD IEAVARPGKI EWFDPLNRLL KSGNTVHICP ENIDLTTSSR  480
TANTTTKLTN VRVLTNRVVS NSSEEESMMK ISEGHHRINR VVLQQSVGAK VNGTETTLAS  540
QSAPNSLGTK HLEINDMNCS SYQLQSAKVA DRHCEESSGG ETTTSLTHAA KPATQAVGVQ  600
NESTVPRKCP KFLLSGVRGD ELERLAKVSK FYDRAELQEF LQKLPEHQRG DAVSSMVYEA  660
NARVRDPVYG CVGAIASLQN QVSLLQMQLA VAQAEVVCMQ MTMDMEEPQK LWEPLWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-1862069735112LOB family transfactor Ramosa2.1
5ly0_B2e-1862069735112LOB family transfactor Ramosa2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754503e-42HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767937.10.0PREDICTED: protein NLP7-like isoform X3
RefseqXP_009767938.10.0PREDICTED: protein NLP7-like isoform X3
RefseqXP_009767939.10.0PREDICTED: protein NLP7-like isoform X3
RefseqXP_009767940.10.0PREDICTED: protein NLP7-like isoform X3
TrEMBLA0A1U7VIP60.0A0A1U7VIP6_NICSY; protein NLP7-like isoform X3
STRINGXP_009767935.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.12e-59NIN like protein 7