PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009767926.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 329aa MW: 37540.6 Da PI: 7.5749 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.5 | 3e-54 | 21 | 147 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL kkv + ++++ +i evd++kvePw+Lp k+k +ekewyfF+ rdkky+tg r+nrat++gyWkatgkdke+++ XP_009767926.1 21 LPPGFRFHPTDEELITHYLSKKVVDIDFTA-IAIGEVDMNKVEPWELPWKAKIGEKEWYFFCVRDKKYPTGLRTNRATAAGYWKATGKDKEIFR- 113 79*************************999.88***************98999*****************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg+kktLvfykgrapkgekt+Wv heyrle XP_009767926.1 114 GKSLVGMKKTLVFYKGRAPKGEKTNWVTHEYRLE 147 999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-61 | 16 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.252 | 21 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.1E-28 | 22 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MMMENFSGVV KEDDQQQQME LPPGFRFHPT DEELITHYLS KKVVDIDFTA IAIGEVDMNK 60 VEPWELPWKA KIGEKEWYFF CVRDKKYPTG LRTNRATAAG YWKATGKDKE IFRGKSLVGM 120 KKTLVFYKGR APKGEKTNWV THEYRLEGRL SLHNLPKTAK NDWVICRVFQ KTTGGKKIHI 180 SGLMQSNSTG NEMGNSLLPP LTDSSPSHVH CFSNFLTAQK SEENMINYFD TSANFAPLSN 240 PIDIFPRNSL PNTISWNQTV PFPQPGSFPV QDPVSLRNLL ENYGQNMQQS FKKEKDMVSV 300 SQETGLSTDM NTEITSSVVQ QDLDCLWTY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-57 | 10 | 177 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-57 | 10 | 177 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-57 | 10 | 177 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-57 | 10 | 177 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-57 | 10 | 177 | 9 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-57 | 10 | 177 | 9 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-57 | 10 | 177 | 9 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-57 | 10 | 177 | 9 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-57 | 10 | 177 | 9 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-57 | 10 | 177 | 9 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-57 | 10 | 177 | 9 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-57 | 10 | 177 | 9 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-57 | 10 | 177 | 6 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-57 | 10 | 177 | 6 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 2e-59 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009767926.1 | 0.0 | PREDICTED: NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 1e-128 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A1U7VSJ3 | 0.0 | A0A1U7VSJ3_NICSY; NAC domain-containing protein 100-like | ||||
STRING | XP_009767926.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-122 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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