PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009767926.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 329aa    MW: 37540.6 Da    PI: 7.5749
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009767926.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.53e-54211471129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL kkv + ++++  +i evd++kvePw+Lp k+k +ekewyfF+ rdkky+tg r+nrat++gyWkatgkdke+++ 
  XP_009767926.1  21 LPPGFRFHPTDEELITHYLSKKVVDIDFTA-IAIGEVDMNKVEPWELPWKAKIGEKEWYFFCVRDKKYPTGLRTNRATAAGYWKATGKDKEIFR- 113
                     79*************************999.88***************98999*****************************************. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     +++lvg+kktLvfykgrapkgekt+Wv heyrle
  XP_009767926.1 114 GKSLVGMKKTLVFYKGRAPKGEKTNWVTHEYRLE 147
                     999*****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-6116171IPR003441NAC domain
PROSITE profilePS5100558.25221171IPR003441NAC domain
PfamPF023658.1E-2822146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MMMENFSGVV KEDDQQQQME LPPGFRFHPT DEELITHYLS KKVVDIDFTA IAIGEVDMNK  60
VEPWELPWKA KIGEKEWYFF CVRDKKYPTG LRTNRATAAG YWKATGKDKE IFRGKSLVGM  120
KKTLVFYKGR APKGEKTNWV THEYRLEGRL SLHNLPKTAK NDWVICRVFQ KTTGGKKIHI  180
SGLMQSNSTG NEMGNSLLPP LTDSSPSHVH CFSNFLTAQK SEENMINYFD TSANFAPLSN  240
PIDIFPRNSL PNTISWNQTV PFPQPGSFPV QDPVSLRNLL ENYGQNMQQS FKKEKDMVSV  300
SQETGLSTDM NTEITSSVVQ QDLDCLWTY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-57101776171NO APICAL MERISTEM PROTEIN
1ut4_B2e-57101776171NO APICAL MERISTEM PROTEIN
1ut7_A2e-57101776171NO APICAL MERISTEM PROTEIN
1ut7_B2e-57101776171NO APICAL MERISTEM PROTEIN
3swm_A2e-57101779174NAC domain-containing protein 19
3swm_B2e-57101779174NAC domain-containing protein 19
3swm_C2e-57101779174NAC domain-containing protein 19
3swm_D2e-57101779174NAC domain-containing protein 19
3swp_A2e-57101779174NAC domain-containing protein 19
3swp_B2e-57101779174NAC domain-containing protein 19
3swp_C2e-57101779174NAC domain-containing protein 19
3swp_D2e-57101779174NAC domain-containing protein 19
4dul_A2e-57101776171NAC domain-containing protein 19
4dul_B2e-57101776171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754422e-59HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767926.10.0PREDICTED: NAC domain-containing protein 100-like
SwissprotQ9FLJ21e-128NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A1U7VSJ30.0A0A1U7VSJ3_NICSY; NAC domain-containing protein 100-like
STRINGXP_009767926.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-122NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]