PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009767834.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 436aa    MW: 49703.2 Da    PI: 6.6103
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009767834.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.28e-082272248
                     T-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqkyl 48
                     ++W+ Ia+ m  gR +kqc++rw+++l
   XP_009767834.1  2 RRWAQIAENMV-GRAGKQCRERWHNHL 27
                     56*********.*************97 PP
2Myb_DNA-binding56.46.8e-183375145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     ++ W++eE++ lv+a+kq G++ W+ Ia++++ gRt++ +k++w+
   XP_009767834.1 33 KDTWSEEEELMLVEAHKQIGNK-WAEIAKRIP-GRTENAIKNHWN 75
                     679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071755129IPR001005SANT/Myb domain
PROSITE profilePS5129413.744127IPR017930Myb domain
CDDcd001671.87E-5127No hitNo description
Gene3DG3DSA:1.10.10.601.7E-16239IPR009057Homeodomain-like
PfamPF002493.5E-6327IPR001005SANT/Myb domain
SuperFamilySSF466894.3E-26785IPR009057Homeodomain-like
PROSITE profilePS5129424.6532882IPR017930Myb domain
SMARTSM007172.2E-163280IPR001005SANT/Myb domain
PfamPF002496.5E-163375IPR001005SANT/Myb domain
CDDcd001671.05E-123578No hitNo description
Gene3DG3DSA:1.10.10.603.9E-174076IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MRRWAQIAEN MVGRAGKQCR ERWHNHLRPD IKKDTWSEEE ELMLVEAHKQ IGNKWAEIAK  60
RIPGRTENAI KNHWNATKRR QNSRRNKLKK QEKDGPNESK YRSNILQDYI RSKYFSDDSP  120
LTTTMTPMTN ATPPYSDDDS PSLLTSQTYD EEMNFMQNLF GRNSLMENNG KVLDNNSSSS  180
SYGFNSFGFN YSKNDNQTDN GQDGCNLYLE PNMYMADDQS YNCSDLYLSY LLDRTSTSPT  240
TSLPYSGSFA YGNMMNQASS SSGGNNEVDL MEMFYCLLHS STASFRNSGL LFGGGPKINK  300
DKESDVDYEP PTINTIIPKH MNTVNDFQEK VLGGNHHGFK AWTNGFRRFR KLQHQNLTNG  360
RKWLTNMGGR PRTMDGESSD EAAPLQRKRI SSSAQPDAQL GELQNPTVEE VQALWGEMDL  420
VENMILGFLP PFLSPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-3428125104C-Myb DNA-Binding Domain
1msf_C4e-3428125104C-Myb DNA-Binding Domain
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767834.10.0PREDICTED: transcription factor MYB108-like
TrEMBLA0A1U7VZL70.0A0A1U7VZL7_NICSY; transcription factor MYB108-like
STRINGXP_009767834.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48251941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.13e-54myb domain protein 119