PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009767818.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 247aa MW: 28456.5 Da PI: 9.5757 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.1 | 1.4e-18 | 90 | 144 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Lee F+++ ++ +++eLA+kl+L+ rqV vWFqNrRa+ k XP_009767818.1 90 RKKLRLTKEQSTLLEESFKRHTTLAMGQKQELAAKLKLKPRQVEVWFQNRRARTK 144 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 115.9 | 2.3e-37 | 90 | 178 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq++lLEesF+++++L +K+ela +L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eLr+ XP_009767818.1 90 RKKLRLTKEQSTLLEESFKRHTTLAMGQKQELAAKLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCQNLNDENSRLKKELQELRS 178 69*************************************************************************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.41E-18 | 72 | 147 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.5E-18 | 77 | 145 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.07 | 86 | 146 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.0E-15 | 88 | 150 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.6E-16 | 90 | 144 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.05E-13 | 90 | 147 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 121 | 144 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 2.1E-9 | 146 | 178 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 2.4E-17 | 146 | 189 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MGNDNETCDT RLTLGLVTSD LLPKQNQLEE HKKIICLDPS IPLHSSDMEE KKTEGSTSKN 60 CKNDLRQAPN STSPRNFNNF DNESKKNGMR KKLRLTKEQS TLLEESFKRH TTLAMGQKQE 120 LAAKLKLKPR QVEVWFQNRR ARTKLKQTEV DCEFLKKCCQ NLNDENSRLK KELQELRSIK 180 IDQWASPFHL RLPKIRTIAL CPSCQKTENI KSEQKHCDLD CGNQKVASDA MSKEANSDTI 240 LVKEKNK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 146 | RRARTKLKQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009767818.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT9-like | ||||
TrEMBL | A0A1U7VN60 | 1e-179 | A0A1U7VN60_NICSY; homeobox-leucine zipper protein HAT9-like | ||||
STRING | XP_009767818.1 | 1e-180 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22800.1 | 3e-46 | HD-ZIP family protein |