PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009767636.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GATA | ||||||||
Protein Properties | Length: 175aa MW: 19285.7 Da PI: 10.4216 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.3 | 2.4e-19 | 36 | 70 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ CgttkTplWR gp g+k+LCnaCG++ rkk++ XP_009767636.1 36 CVDCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 70 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.73 | 30 | 66 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 5.6E-15 | 30 | 80 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.32E-13 | 32 | 70 | No hit | No description |
CDD | cd00202 | 3.97E-13 | 35 | 86 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.1E-15 | 35 | 70 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 36 | 61 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.8E-17 | 36 | 70 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MVDFSDKVAE NEEMKGQNQT PERVLSENSE SQLKTCVDCG TTKTPLWRGG PAGPKSLCNA 60 CGIRSRKKRR ALLGLNKEDK KPKKSMGSSN KSASQHHNQN NQSSNSSTSS SEESTTSNAV 120 KNNKCIPFKK RLLHFGREVA LQRPRSSSTQ HRRKLGEEEQ AAFLLMALSC GSVYA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00335 | DAP | Transfer from AT3G06740 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009767636.1 | 1e-127 | PREDICTED: GATA transcription factor 15-like isoform X2 | ||||
TrEMBL | A0A1U7VRQ4 | 1e-125 | A0A1U7VRQ4_NICSY; GATA transcription factor 15-like isoform X2 | ||||
STRING | XP_009767635.1 | 1e-103 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 8e-36 | GATA transcription factor 15 |