 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_009767633.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
| Family | ARR-B | ||||||||
| Protein Properties | Length: 503aa MW: 56060.9 Da PI: 5.572 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 81.9 | 7.1e-26 | 156 | 209 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
k+r+ W+ eLHe+F++av+qL G ++A+Pk+ilelm+v+ L +ehv+SHLQkYRl
XP_009767633.1 156 KARVLWSAELHEKFLQAVNQL-GMDRAVPKKILELMNVPWLKREHVASHLQKYRL 209
689******************.********************************7 PP
| |||||||
| 2 | Response_reg | 55.1 | 4.4e-19 | 3 | 85 | 28 | 109 |
EESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
Response_reg 28 eaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
++ +e al ll+e++ ++l++ D+ mp+mdG++ll++i e +lp+i+++a ++++ + + + Ga+d+l Kp+ +e+l +
XP_009767633.1 3 TCNRAEVALSLLRENKneFHLVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDSKNVVMKGVIHGAHDYLIKPVRIEALKN 85
677789999999888888**********************6654.8**********************************9986 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00448 | 0.0031 | 1 | 87 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 31.293 | 1 | 91 | IPR001789 | Signal transduction response regulator, receiver domain |
| Gene3D | G3DSA:3.40.50.2300 | 5.0E-28 | 2 | 98 | No hit | No description |
| CDD | cd00156 | 3.10E-19 | 2 | 90 | No hit | No description |
| SuperFamily | SSF52172 | 6.12E-23 | 3 | 93 | IPR011006 | CheY-like superfamily |
| Pfam | PF00072 | 1.1E-15 | 4 | 85 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS51294 | 9.13 | 153 | 212 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 2.33E-18 | 154 | 213 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 8.4E-27 | 155 | 213 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 8.6E-23 | 156 | 209 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 4.9E-8 | 160 | 208 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 503 aa Download sequence Send to blast |
MTTCNRAEVA LSLLRENKNE FHLVISDVHM PDMDGFKLLE HIGLEMDLPV IMMSADDSKN 60 VVMKGVIHGA HDYLIKPVRI EALKNIWQHV VRKNKDEWKG KVFDQSESVE DGEWPQEPPE 120 DVEHSSSANE GNLKRSKKRK EEDETEERDD MVALKKARVL WSAELHEKFL QAVNQLGMDR 180 AVPKKILELM NVPWLKREHV ASHLQKYRLL LKKSMGVPQH PSGLNYSFIG HSEATFGTPL 240 NGQLPAQSLA TLWGAALGQS ATKSSLHVPL VDQGNHFSFE NPKLRFQTQQ QLNNSNKQVN 300 LLYGIPTTVE PKQSLRNGIV DNARGDIYNQ ASQAYSAVDF SLNQNMQLRG SSFPASGNSA 360 MSTLATKGML KEEVNTDIRG SRGFSPNDDS FSGLYQQTKQ DWCLQNVGST FDTSYHSSIQ 420 HRISSMDKSG QNTNAPIAEA VLSSGQETGH VNLMGGSQLN SLLEGEPFGQ EDLMSAFFEQ 480 QQSIGPVETA FGDDDDPLDN LLM |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 1e-19 | 153 | 213 | 2 | 62 | ARR10-B |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009767633.1 | 0.0 | PREDICTED: two-component response regulator ARR2-like isoform X4 | ||||
| Refseq | XP_009767634.1 | 0.0 | PREDICTED: two-component response regulator ARR2-like isoform X5 | ||||
| Swissprot | Q9ZWJ9 | 1e-113 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
| TrEMBL | A0A1U7VZ22 | 0.0 | A0A1U7VZ22_NICSY; Two-component response regulator | ||||
| STRING | XP_009767630.1 | 0.0 | (Nicotiana sylvestris) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G16110.1 | 1e-106 | response regulator 2 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|