PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009767562.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 279aa    MW: 31833.6 Da    PI: 6.5116
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009767562.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-172269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEde+l +++++ G g+W+t +++ g+ R++k+c++rw +yl
   XP_009767562.1 22 RGPWTPEEDEILTNYINKEGEGRWRTLPKKAGLLRCGKSCRLRWMNYL 69
                     89******************************99************97 PP

2Myb_DNA-binding49.97.3e-1675120148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg  +++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
   XP_009767562.1  75 RGHISPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 120
                      67779*****************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-231372IPR009057Homeodomain-like
PROSITE profilePS5129416.081769IPR017930Myb domain
SuperFamilySSF466891.36E-2919116IPR009057Homeodomain-like
SMARTSM007171.9E-132171IPR001005SANT/Myb domain
PfamPF002495.0E-152269IPR001005SANT/Myb domain
CDDcd001675.56E-112469No hitNo description
PROSITE profilePS5129425.24770124IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.8E-2573125IPR009057Homeodomain-like
SMARTSM007173.8E-1574122IPR001005SANT/Myb domain
PfamPF002491.0E-1475120IPR001005SANT/Myb domain
CDDcd001676.61E-1279120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MRTPTSSKTK VTPCCSKVGL KRGPWTPEED EILTNYINKE GEGRWRTLPK KAGLLRCGKS  60
CRLRWMNYLR PSVKRGHISP DEEDLILRLH RLLGNRWSLI AGRIPGRTDN EIKNYWNTHL  120
SKKLISQGID PRTHKPLINR NSSSDDHITN KASSSSPSSS SKLANDFNTI SNPIYIPFQM  180
EEPLRSSINI NHPGEITSLD DYQYQSNAML ANYNIDDLNI VVEEDDEMNC CRDDVFSSFL  240
NSLINEDMFN SQNQQITNGM FPDFDPLVNP TQDNQQESG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25201245108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767562.10.0PREDICTED: transcription repressor MYB5-like
RefseqXP_016487365.10.0PREDICTED: transcription repressor MYB5-like
SwissprotQ388504e-82MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A1S4BEK90.0A0A1S4BEK9_TOBAC; transcription repressor MYB5-like
TrEMBLA0A1U7VHK90.0A0A1U7VHK9_NICSY; transcription repressor MYB5-like
STRINGXP_009767562.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-84myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]