PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009767440.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 188aa    MW: 20925.2 Da    PI: 8.3251
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009767440.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24e-182675255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr ++  gr++AeIrdp     + +r++lg+f+tae+Aa+a++ a+++++g
  XP_009767440.1 26 RYRGVRKRP-LGRFAAEIRDPI----KkARVWLGTFDTAEDAARAYDDAARAFHG 75
                    7********.8*********72....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-112675IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-212684IPR016177DNA-binding domain
PROSITE profilePS5103222.5242683IPR001471AP2/ERF domain
SMARTSM003801.5E-352689IPR001471AP2/ERF domain
CDDcd000184.44E-172682No hitNo description
Gene3DG3DSA:3.30.730.102.6E-302683IPR001471AP2/ERF domain
PRINTSPR003671.7E-92738IPR001471AP2/ERF domain
PRINTSPR003671.7E-94965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MPRRKNSETN RSTSVAFRHP KTDPNRYRGV RKRPLGRFAA EIRDPIKKAR VWLGTFDTAE  60
DAARAYDDAA RAFHGPKAKT NFSVLPPYGQ NQFENFSRPA SSSLSSTVES SNGVRDLHSR  120
VEITRRITPP AVECYSGCDS SSTVVDDNID GDSSSFCKQP LPFDLNLLPP SDDVDDVHVT  180
PCIFSYVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-182782359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-182782662ATERF1
3gcc_A2e-182782662ATERF1
5wx9_A9e-1822821071Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6690770.0AB669077.1 Nicotiana tabacum NtERF#044 gene for ethylene response factor #44, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767438.11e-137PREDICTED: ethylene-responsive transcription factor 3-like
RefseqXP_009767439.11e-137PREDICTED: ethylene-responsive transcription factor 3-like
RefseqXP_009767440.11e-137PREDICTED: ethylene-responsive transcription factor 3-like
RefseqXP_016503257.11e-137PREDICTED: ethylene-responsive transcription factor 3-like
RefseqXP_016503258.11e-137PREDICTED: ethylene-responsive transcription factor 3-like
RefseqXP_016503259.11e-137PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotO803394e-28ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A1U7VYH41e-135A0A1U7VYH4_NICSY; ethylene-responsive transcription factor 3-like
TrEMBLR4WAQ51e-135R4WAQ5_TOBAC; Ethylene response factor #44
STRINGXP_009767438.11e-136(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.12e-18ERF domain protein 10
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]