PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009767411.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YA | ||||||||
Protein Properties | Length: 226aa MW: 25186.4 Da PI: 9.718 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 93.8 | 2.1e-29 | 70 | 126 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rak+ e+k+ ksrkpylheSRh+hA+rR+R gGrF XP_009767411.1 70 EEPMYVNAKQYHGILRRRQLRAKAVLEQKV-VKSRKPYLHESRHRHAMRRARDGGGRF 126 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 8.3E-33 | 68 | 129 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 34.792 | 69 | 129 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.1E-26 | 71 | 126 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.1E-22 | 72 | 94 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.1E-22 | 103 | 126 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MPPIMGENLK AANQFELMAP SIAFKSYPYS EVPQYSGGNV AAACGESLVH QNIERSVHNG 60 RMILPIEVKE EPMYVNAKQY HGILRRRQLR AKAVLEQKVV KSRKPYLHES RHRHAMRRAR 120 DGGGRFLNTK KKIQLPANNN INTTTPSSKG KGCAASEVSS MDSDFSQNYL LNSGHIGSSN 180 ATSVEGFQFQ GIHNTDNPQL GCHYQWNLND NHCNCMQSGA SNLQPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-20 | 70 | 132 | 2 | 64 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 119 | RHRHAMRRAR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009767410.1 | 1e-171 | PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X2 | ||||
Refseq | XP_009767411.1 | 1e-171 | PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X2 | ||||
Refseq | XP_009767412.1 | 1e-171 | PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X2 | ||||
TrEMBL | A0A1U7VR41 | 1e-170 | A0A1U7VR41_NICSY; nuclear transcription factor Y subunit A-1-like isoform X2 | ||||
STRING | XP_009767409.1 | 1e-170 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.4 | 4e-30 | nuclear factor Y, subunit A1 |