PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009767401.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 408aa    MW: 44456.8 Da    PI: 6.3595
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009767401.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.8e-18222276256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  XP_009767401.1 222 RKKLRLSKEQSAYLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 276
                     778899***********************************************98 PP
2HD-ZIP_I/II127.36.5e-41222311191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlskeq++ LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +l
  XP_009767401.1 222 RKKLRLSKEQSAYLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELR-AL 311
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-17203276IPR009057Homeodomain-like
SuperFamilySSF466891.07E-18213279IPR009057Homeodomain-like
PROSITE profilePS5007117.167218278IPR001356Homeobox domain
SMARTSM003895.1E-16220282IPR001356Homeobox domain
PfamPF000462.1E-15222276IPR001356Homeobox domain
CDDcd000862.48E-15222279No hitNo description
PROSITE patternPS000270253276IPR017970Homeobox, conserved site
PfamPF021836.8E-11278312IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.6E-25278321IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MELGLSLGDT NTNTTTATAA AASSKSFFLS KNIKTSSSDQ NHSKKKRKGL GFCMALGINS  60
SNGKVQEQHD DDDDDDEENP EKSHDDEDDE GDEHTSEEGN INGNTPVQLD LLPLAPVPRR  120
SFPQSLHWSS DNGSSENGSS GNGGLPAARG FDVNRVPAAG TEEVSSPNSI ASSFRMDFGL  180
FRSANIIGNK RNSDSGGGND GGEPERASSR ASDEDENGVN TRKKLRLSKE QSAYLEESFK  240
EHHTLNPKQK LALAKQLNLR PRQVEVWFQN RRARTKLKQT EVDCEYLKRC CETLTEENRR  300
LHKELQELRA LKSSNPFYMQ LPATTLTMCP SCERVATTTS ATAAPPTTAA GTTTPKAPTP  360
IPTTTITTTT TTSDSIPKAI PFLNSRPRFF PFNTTTNSPN HPHQSAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220226TRKKLRL
2270278RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754402e-91HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767401.10.0PREDICTED: homeobox-leucine zipper protein HOX11-like
SwissprotP466654e-93HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A1U7VR320.0A0A1U7VR32_NICSY; homeobox-leucine zipper protein HOX11-like
STRINGXP_009767401.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.17e-70homeobox from Arabidopsis thaliana