PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009767328.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 148aa    MW: 16288.3 Da    PI: 8.2099
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009767328.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552e-171666155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    ++y+G+r++k +g+Wv+eIr+p   g +  r +lg++ t+e Aa a++ a  +l+ 
  XP_009767328.1 16 KKYRGIRRRK-WGKWVSEIRVP---G-SsERLWLGTYATPEAAAVAHDIAYYCLRE 66
                    59*****998.**********8...4.34***********************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.43E-251676No hitNo description
PfamPF008472.2E-91765IPR001471AP2/ERF domain
SMARTSM003805.5E-251782IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-171777IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-251776IPR001471AP2/ERF domain
PROSITE profilePS5103221.4831776IPR001471AP2/ERF domain
PRINTSPR003672.4E-91829IPR001471AP2/ERF domain
PRINTSPR003672.4E-94056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MSSSDEGGSS TSAHQKKYRG IRRRKWGKWV SEIRVPGSSE RLWLGTYATP EAAAVAHDIA  60
YYCLRESSSL DKLNFPFMLP VNVDRGMSPR SVQKVASDAG MAIDAKLVTS YPTVKGGQQE  120
MNIGHVCQSV DNHGQSEALS ISVEDYLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-15576272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767328.11e-108PREDICTED: ethylene-responsive transcription factor ERF020-like
RefseqXP_016443781.11e-108PREDICTED: ethylene-responsive transcription factor ERF020-like
SwissprotQ9C9I89e-44ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A1S3XV091e-106A0A1S3XV09_TOBAC; ethylene-responsive transcription factor ERF020-like
TrEMBLA0A1U7VLT91e-106A0A1U7VLT9_NICSY; ethylene-responsive transcription factor ERF020-like
STRINGXP_009767328.11e-107(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94942028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.15e-46ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]