PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009767292.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 309aa MW: 35372.8 Da PI: 8.5291

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009767292.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160	9.4e-50	30	155	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk 95 pGfrFhPtdeelv +yL++kve++++ l + ik++diyk++PwdLpk +++e+ewy+++kr +ky+++ r+nr ++ sg+Wkatg dk+++ XP_009767292.1 30 LPGFRFHPTDEELVGFYLRRKVEKRPIAL-QLIKQMDIYKYDPWDLPKGSNKGENEWYYYCKRGRKYKNSVRPNRvTAGSGFWKATGIDKPIYG- 122 59***********************99.89***********98899999****************5556***********. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 kge++glkk+Lv+y+g+a kg+kt+W+mhe+rl XP_009767292.1 123 KGEVIGLKKSLVYYRGSAGKGTKTEWMMHEFRL 155 999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	52.077	29	182	IPR003441	NAC domain
SuperFamily	SSF101941	5.36E-54	29	182	IPR003441	NAC domain
Pfam	PF02365	4.7E-24	31	155	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MEVEKIHCSI VTNNNDNKLE AEEDDEDVQL PGFRFHPTDE ELVGFYLRRK VEKRPIALQL 60 IKQMDIYKYD PWDLPKGSNK GENEWYYYCK RGRKYKNSVR PNRVTAGSGF WKATGIDKPI 120 YGKGEVIGLK KSLVYYRGSA GKGTKTEWMM HEFRLPNNKY LHAANNIAQE AEAWTLCRIL 180 KRNASYRKFV PDWKEVAAAK QQRNAVPKIC SNNIINSDSP RNSQIYISFS TPPVVKQNTA 240 YIDDAENKQL LNVGQQSSGS TNDASMLSTV AAASNSSLLN SPLDFNEWLE NGNWDELKSI 300 FDLSFDPFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-50	17	188	2	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-50	17	188	2	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-50	17	188	2	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-50	17	188	2	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-50	22	188	10	174	NAC domain-containing protein 19
3swm_B	2e-50	22	188	10	174	NAC domain-containing protein 19
3swm_C	2e-50	22	188	10	174	NAC domain-containing protein 19
3swm_D	2e-50	22	188	10	174	NAC domain-containing protein 19
3swp_A	2e-50	22	188	10	174	NAC domain-containing protein 19
3swp_B	2e-50	22	188	10	174	NAC domain-containing protein 19
3swp_C	2e-50	22	188	10	174	NAC domain-containing protein 19
3swp_D	2e-50	22	188	10	174	NAC domain-containing protein 19
4dul_A	2e-50	17	188	2	171	NAC domain-containing protein 19
4dul_B	2e-50	17	188	2	171	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009767292.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1-like
TrEMBL	A0A1U7VGT1	0.0	A0A1U7VGT1_NICSY; transcription factor JUNGBRUNNEN 1-like
STRING	XP_009767292.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1697	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	2e-83	NAC domain containing protein 42