PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009767273.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 148aa    MW: 16760.3 Da    PI: 4.9324
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009767273.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.54.8e-1887952128
             NAM  52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                      ae ++wyf+s++ +       ++r+t +gyW+  g d++++s+ +++++g+kk  +fy g + p+g+kt+W+m+eyrl
  XP_009767273.1   8 MAEGNKWYFYSRATN-------ETRITGNGYWQPVGVDESIMSSsNHKVIGTKKYYAFYMGdEPPQGHKTNWLMQEYRL 79 
                     456789****99755.......5799****************9977888**********996789************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.8071114IPR003441NAC domain
SuperFamilySSF1019412.75E-243113IPR003441NAC domain
PfamPF023655.1E-101379IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MVLAGKAMAE GNKWYFYSRA TNETRITGNG YWQPVGVDES IMSSSNHKVI GTKKYYAFYM  60
GDEPPQGHKT NWLMQEYRLS HSSASATRSS SRTSTTHSTN GYYSKWVICR VYESNSDNDE  120
NDSAELSCLD EVFLSLDDLD DDNISLPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-16211661167NO APICAL MERISTEM PROTEIN
1ut4_B4e-16211661167NO APICAL MERISTEM PROTEIN
1ut7_A4e-16211661167NO APICAL MERISTEM PROTEIN
1ut7_B4e-16211661167NO APICAL MERISTEM PROTEIN
3swm_A3e-16211664170NAC domain-containing protein 19
3swm_B3e-16211664170NAC domain-containing protein 19
3swm_C3e-16211664170NAC domain-containing protein 19
3swm_D3e-16211664170NAC domain-containing protein 19
3swp_A3e-16211664170NAC domain-containing protein 19
3swp_B3e-16211664170NAC domain-containing protein 19
3swp_C3e-16211664170NAC domain-containing protein 19
3swp_D3e-16211664170NAC domain-containing protein 19
4dul_A4e-16211661167NAC domain-containing protein 19
4dul_B4e-16211661167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767273.11e-108PREDICTED: NAC transcription factor 25-like
SwissprotQ8GWK62e-43NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A1U7VLN71e-107A0A1U7VLN7_NICSY; NAC transcription factor 25-like
STRINGXP_009767273.11e-108(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37662447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-33xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]