PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009767273.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 148aa MW: 16760.3 Da PI: 4.9324 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 57.5 | 4.8e-18 | 8 | 79 | 52 | 128 |
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128 ae ++wyf+s++ + ++r+t +gyW+ g d++++s+ +++++g+kk +fy g + p+g+kt+W+m+eyrl XP_009767273.1 8 MAEGNKWYFYSRATN-------ETRITGNGYWQPVGVDESIMSSsNHKVIGTKKYYAFYMGdEPPQGHKTNWLMQEYRL 79 456789****99755.......5799****************9977888**********996789************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 27.807 | 1 | 114 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.75E-24 | 3 | 113 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.1E-10 | 13 | 79 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MVLAGKAMAE GNKWYFYSRA TNETRITGNG YWQPVGVDES IMSSSNHKVI GTKKYYAFYM 60 GDEPPQGHKT NWLMQEYRLS HSSASATRSS SRTSTTHSTN GYYSKWVICR VYESNSDNDE 120 NDSAELSCLD EVFLSLDDLD DDNISLPH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-16 | 2 | 116 | 61 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-16 | 2 | 116 | 61 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-16 | 2 | 116 | 61 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-16 | 2 | 116 | 61 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-16 | 2 | 116 | 64 | 170 | NAC domain-containing protein 19 |
3swm_B | 3e-16 | 2 | 116 | 64 | 170 | NAC domain-containing protein 19 |
3swm_C | 3e-16 | 2 | 116 | 64 | 170 | NAC domain-containing protein 19 |
3swm_D | 3e-16 | 2 | 116 | 64 | 170 | NAC domain-containing protein 19 |
3swp_A | 3e-16 | 2 | 116 | 64 | 170 | NAC domain-containing protein 19 |
3swp_B | 3e-16 | 2 | 116 | 64 | 170 | NAC domain-containing protein 19 |
3swp_C | 3e-16 | 2 | 116 | 64 | 170 | NAC domain-containing protein 19 |
3swp_D | 3e-16 | 2 | 116 | 64 | 170 | NAC domain-containing protein 19 |
4dul_A | 4e-16 | 2 | 116 | 61 | 167 | NAC domain-containing protein 19 |
4dul_B | 4e-16 | 2 | 116 | 61 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009767273.1 | 1e-108 | PREDICTED: NAC transcription factor 25-like | ||||
Swissprot | Q8GWK6 | 2e-43 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A1U7VLN7 | 1e-107 | A0A1U7VLN7_NICSY; NAC transcription factor 25-like | ||||
STRING | XP_009767273.1 | 1e-108 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3766 | 24 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 2e-33 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
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