PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009767242.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 507aa MW: 55172.5 Da PI: 5.3791

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009767242.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.6	5.3e-09	327	375	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_009767242.1 327 NSHSLAERIRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 375 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.50E-11	322	379	No hit	No description
SuperFamily	SSF47459	4.45E-17	322	393	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.434	324	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-16	325	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-6	327	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.3E-10	330	380	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
MDIASKNDSE PEKRNNEEVV NYQSPNISSE WQLSGSNLTN VSMGMIQSNN QMVDTFCPTS 60 WDQPTNSPSL GFCDANVQIN PSTSNPLVTL GPNWTPNAML KGGMFLPPAP MMLPQSLAQF 120 PADSDFIERA ARFSCFSGGN FGDMMNSFSL PESMNPYYRG PPPMQGPREL LASNGLKSPF 180 AQKQHLSNVA ESSKDVSLTV DHRDTERSPL KNEKKSENFD EVGAVSGNES GEAECSGRQE 240 EMDGAGEESY GKNIGSKKRK RGGKDTEPQQ PPAESGKDQI EIQKAEQNLN SVAGKSGGKN 300 GKQGSQASDP TKEDYIHVRA RRGQATNSHS LAERIRREKI SERMKFLQDL VPGCNKVTGK 360 AVMLDEIINY VQSLQRQVEF LSMKLATVNP QLDFNIDGLL AKNILQSRAG PSSSLAFPPD 420 MTMPYPPLHP PQPGYGIPSD AFRRAITPHL AATSGGPSEY KHPSSEGPSV WDNELHNIVQ 480 MGLNSSIPLS SEDLSGSLPA GRMKAEP

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

MDIASKNDSE PEKRNNEEVV NYQSPNISSE WQLSGSNLTN VSMGMIQSNN QMVDTFCPTS  60
WDQPTNSPSL GFCDANVQIN PSTSNPLVTL GPNWTPNAML KGGMFLPPAP MMLPQSLAQF  120
PADSDFIERA ARFSCFSGGN FGDMMNSFSL PESMNPYYRG PPPMQGPREL LASNGLKSPF  180
AQKQHLSNVA ESSKDVSLTV DHRDTERSPL KNEKKSENFD EVGAVSGNES GEAECSGRQE  240
EMDGAGEESY GKNIGSKKRK RGGKDTEPQQ PPAESGKDQI EIQKAEQNLN SVAGKSGGKN  300
GKQGSQASDP TKEDYIHVRA RRGQATNSHS LAERIRREKI SERMKFLQDL VPGCNKVTGK  360
AVMLDEIINY VQSLQRQVEF LSMKLATVNP QLDFNIDGLL AKNILQSRAG PSSSLAFPPD  420
MTMPYPPLHP PQPGYGIPSD AFRRAITPHL AATSGGPSEY KHPSSEGPSV WDNELHNIVQ  480
MGLNSSIPLS SEDLSGSLPA GRMKAEP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009767242.1	0.0	PREDICTED: transcription factor bHLH49
Refseq	XP_009767243.1	0.0	PREDICTED: transcription factor bHLH49
TrEMBL	A0A1U7VGN4	0.0	A0A1U7VGN4_NICSY; transcription factor bHLH49
STRING	XP_009767242.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2871	21	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	4e-94	bHLH family protein