PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009767038.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 185aa MW: 20544.1 Da PI: 5.3108 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.2 | 8.6e-18 | 23 | 73 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s y+G+r k++g+Wv+eIr+p++ ++r++lg++ t+e+Aa+a++ a+++l+g+ XP_009767038.1 23 SVYRGIR--KRNGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAALALKGH 73 78****6..779*********843...5*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.62E-15 | 23 | 80 | No hit | No description |
Pfam | PF00847 | 3.4E-11 | 23 | 73 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-18 | 23 | 81 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.389 | 24 | 80 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.7E-26 | 24 | 86 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-26 | 24 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MWSNHCPSNS AAISNRSEQG RHSVYRGIRK RNGKWVSEIR EPRKTTRIWL GTYPTPEMAA 60 AAYDVAALAL KGHDTPLNFP GSMCSYTMPA SLTAADIRAA AANAAAVRAP QLEREEARHQ 120 AECQPEVGDG AMGQEFFDEE EVFGMPRLLV DMAEAMLVSP PRMKTTPYDE LPEYSDASYT 180 LWSYP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-12 | 22 | 92 | 12 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009767038.1 | 1e-137 | PREDICTED: ethylene-responsive transcription factor ERF025-like | ||||
Refseq | XP_009767039.1 | 1e-137 | PREDICTED: ethylene-responsive transcription factor ERF025-like | ||||
Swissprot | Q9FJ90 | 5e-49 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | A0A1U7VXD8 | 1e-136 | A0A1U7VXD8_NICSY; ethylene-responsive transcription factor ERF025-like | ||||
STRING | XP_009767038.1 | 1e-136 | (Nicotiana sylvestris) | ||||
STRING | XP_009767039.1 | 1e-136 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA553 | 22 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 2e-40 | ERF family protein |
Publications ? help Back to Top | |||
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